Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30824 * 122.99533 * 2 1 4 4 C 1.30263 * 117.28140 * 179.73566 * 3 2 1 5 5 N 1.37796 * 124.74247 * 179.97438 * 4 3 2 6 6 C 1.46492 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.46504 * 119.99900 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.46745 * 89.99933 * 7 5 4 9 9 H 1.07999 * 120.00439 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99515 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00602 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99771 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47033 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47428 * 119.99772 * 12 10 8 15 15 H 1.48503 * 109.47187 * 240.00095 * 12 10 8 16 16 S 1.70922 * 110.51353 * 359.97438 * 4 3 2 17 17 C 1.36835 * 122.99356 * 179.70805 * 2 1 3 18 18 C 1.41730 * 126.11483 * 0.26776 * 17 2 1 19 19 O 1.21689 * 120.00111 * 0.02562 * 18 17 2 20 20 O 1.34952 * 120.00082 * 179.97438 * 18 17 2 21 21 H 1.08994 * 109.47630 * 90.02405 * 1 2 3 22 22 H 1.09004 * 109.47277 * 210.02562 * 1 2 3 23 23 H 1.09005 * 109.47087 * 330.02339 * 1 2 3 24 24 H 1.09007 * 109.47557 * 90.00112 * 6 5 4 25 25 H 1.09001 * 109.47223 * 209.99622 * 6 5 4 26 26 H 1.08996 * 109.47348 * 329.99912 * 6 5 4 27 27 H 1.08994 * 109.46941 * 210.00023 * 7 5 4 28 28 H 1.08998 * 109.47098 * 330.00047 * 7 5 4 29 29 H 0.96996 * 120.00586 * 179.97438 * 11 10 8 30 30 H 0.96698 * 113.99900 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2193 1.0972 0.0000 4 6 3.5155 0.9676 0.0053 5 7 4.4096 2.0160 0.0057 6 6 3.9196 3.3966 -0.0009 7 6 5.8503 1.7501 0.0125 8 6 6.3501 1.6544 -1.4060 9 1 5.6635 1.7795 -2.2301 10 6 7.6843 1.4080 -1.6515 11 7 8.5208 1.2572 -0.6480 12 14 8.3041 1.2900 -3.4098 13 1 7.1720 1.4958 -4.3485 14 1 9.3360 2.3323 -3.6420 15 1 8.8967 -0.0526 -3.6367 16 16 3.9521 -0.6850 0.0119 17 6 2.2520 -1.1477 0.0058 18 6 1.7466 -2.4718 0.0072 19 8 0.5451 -2.6645 0.0026 20 8 2.5979 -3.5190 0.0127 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 3.7938 3.7424 1.0252 25 1 4.6389 4.0350 -0.5137 26 1 2.9615 3.4396 -0.5188 27 1 6.3669 2.5610 0.5259 28 1 6.0439 0.8107 0.5302 29 1 9.4593 1.0835 -0.8208 30 1 2.1605 -4.3814 0.0137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087656461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -48.966631 kcal Electronic energy + Delta-G solvation = -16597.107211 eV Core-core repulsion = 13712.167090 eV Total energy + Delta-G solvation = -2884.940121 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12695 -39.05711 -36.54105 -35.62510 -32.95297 -30.91297 -28.45549 -28.22075 -26.41949 -23.78901 -22.51651 -21.23100 -18.94554 -18.24124 -17.04750 -16.79368 -16.19294 -15.54503 -15.41757 -14.64697 -14.56370 -13.82655 -13.46025 -13.30830 -12.78485 -12.42162 -12.36605 -12.14509 -11.88229 -11.57641 -11.28369 -11.10185 -10.96597 -10.58597 -10.34234 -10.16215 -10.07877 -9.30916 -9.20249 -8.76382 -8.67672 -7.04480 -6.32187 -4.44127 0.87881 1.65541 2.33686 2.81797 3.14792 3.23665 3.26909 3.44910 3.50927 3.70898 4.22184 4.77944 5.00226 5.37647 5.66086 5.86071 5.87580 5.89714 6.00618 6.14729 6.19767 6.37603 6.62463 6.76411 6.84391 7.26518 7.61454 7.65840 7.77956 8.20305 8.26588 8.62988 9.24771 10.72432 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.006619 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.583999 B = 4229.535786 C = 4893.477653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.240 3.760 3 N -0.583 5.583 4 C 0.346 3.654 5 N -0.536 5.536 6 C 0.097 3.903 7 C 0.239 3.761 8 C -0.546 4.546 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.279 1.279 16 S 0.191 5.809 17 C -0.413 4.413 18 C 0.572 3.428 19 O -0.537 6.537 20 O -0.510 6.510 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.268 0.732 30 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.070 -2.465 2.081 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.094 3.906 3 N -0.311 5.311 4 C -0.022 4.022 5 N -0.246 5.246 6 C -0.049 4.049 7 C 0.120 3.880 8 C -0.585 4.585 9 H 0.084 0.916 10 C -0.135 4.135 11 N -0.525 5.525 12 Si 0.729 3.271 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.205 1.205 16 S 0.443 5.557 17 C -0.538 4.538 18 C 0.421 3.579 19 O -0.431 6.431 20 O -0.319 6.319 21 H 0.098 0.902 22 H 0.115 0.885 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.876 -1.940 2.142 8.390 hybrid contribution -0.530 -0.477 -0.969 1.203 sum -8.406 -2.417 1.173 8.825 Atomic orbital electron populations 1.20670 0.86903 1.03977 1.03396 1.20504 0.97282 0.84763 0.88098 1.66204 1.02588 1.31038 1.31257 1.23973 0.90497 0.94489 0.93214 1.46947 1.06344 1.02641 1.68647 1.21701 1.00639 0.81331 1.01191 1.19780 0.70951 0.98546 0.98682 1.21424 0.94088 1.51410 0.91544 0.91622 1.24934 0.96364 0.94233 0.97984 1.69913 1.04380 1.47285 1.30917 0.86369 0.78933 0.78050 0.83789 1.19517 1.20647 1.20481 1.84503 1.02529 0.96489 1.72194 1.22913 0.97950 0.95345 1.37600 1.17749 0.83753 0.84232 0.72176 1.90835 1.15956 1.86142 1.50217 1.85117 1.41632 1.18352 1.86845 0.90195 0.88522 0.90939 0.93121 0.90353 0.90918 0.92956 0.94026 0.92189 0.74115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.67 36.00 0.35 -0.97 16 2 C 0.24 4.33 6.83 -83.53 -0.57 3.76 16 3 N -0.58 -11.27 9.71 -10.93 -0.11 -11.37 16 4 C 0.35 7.01 7.71 -88.00 -0.68 6.33 16 5 N -0.54 -10.87 2.94 -185.44 -0.54 -11.42 16 6 C 0.10 1.60 10.54 59.84 0.63 2.24 16 7 C 0.24 5.50 5.11 -5.19 -0.03 5.47 16 8 C -0.55 -13.83 9.39 -34.44 -0.32 -14.15 16 9 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -23.80 13.29 55.43 0.74 -23.07 16 12 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 S 0.19 3.74 21.40 -107.50 -2.30 1.44 16 17 C -0.41 -7.63 6.32 -38.76 -0.25 -7.87 16 18 C 0.57 9.69 8.08 32.06 0.26 9.95 16 19 O -0.54 -9.43 14.89 -19.41 -0.29 -9.72 16 20 O -0.51 -7.26 13.35 -41.18 -0.55 -7.81 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.10 1.43 5.99 -51.93 -0.31 1.12 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.25 8.07 -51.93 -0.42 0.84 16 26 H 0.07 1.17 7.59 -51.93 -0.39 0.78 16 27 H 0.05 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.04 1.01 7.01 -51.93 -0.36 0.64 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.40 3.57 8.98 45.56 0.41 3.98 16 LS Contribution 281.81 15.07 4.25 4.25 Total: -1.00 -29.10 281.81 -6.84 -35.94 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -2.31 Total: 0.16 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.70 Total: 6.44 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.09 Total: -45.86 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.84 Total: -17.52 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.30 Total: 1.44 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.10 -6.84 -35.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087656461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.026 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds