Wall clock time and date at job start Mon Mar 30 2020 04:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30824 * 122.99533 * 2 1 4 4 C 1.30263 * 117.28140 * 179.73566 * 3 2 1 5 5 N 1.37796 * 124.74247 * 179.97438 * 4 3 2 6 6 C 1.46492 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.46504 * 119.99900 * 179.97438 * 5 4 3 8 8 C 1.50703 * 109.46745 * 89.99933 * 7 5 4 9 9 H 1.07999 * 120.00439 * 0.02562 * 8 7 5 10 10 C 1.37879 * 119.99515 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00602 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99771 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47033 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47428 * 119.99772 * 12 10 8 15 15 H 1.48503 * 109.47187 * 240.00095 * 12 10 8 16 16 S 1.70922 * 110.51353 * 359.97438 * 4 3 2 17 17 C 1.36835 * 122.99356 * 179.70805 * 2 1 3 18 18 C 1.41730 * 126.11483 * 0.26776 * 17 2 1 19 19 O 1.21689 * 120.00111 * 0.02562 * 18 17 2 20 20 O 1.34952 * 120.00082 * 179.97438 * 18 17 2 21 21 H 1.08994 * 109.47630 * 90.02405 * 1 2 3 22 22 H 1.09004 * 109.47277 * 210.02562 * 1 2 3 23 23 H 1.09005 * 109.47087 * 330.02339 * 1 2 3 24 24 H 1.09007 * 109.47557 * 90.00112 * 6 5 4 25 25 H 1.09001 * 109.47223 * 209.99622 * 6 5 4 26 26 H 1.08996 * 109.47348 * 329.99912 * 6 5 4 27 27 H 1.08994 * 109.46941 * 210.00023 * 7 5 4 28 28 H 1.08998 * 109.47098 * 330.00047 * 7 5 4 29 29 H 0.96996 * 120.00586 * 179.97438 * 11 10 8 30 30 H 0.96698 * 113.99900 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2193 1.0972 0.0000 4 6 3.5155 0.9676 0.0053 5 7 4.4096 2.0160 0.0057 6 6 3.9196 3.3966 -0.0009 7 6 5.8503 1.7501 0.0125 8 6 6.3501 1.6544 -1.4060 9 1 5.6635 1.7795 -2.2301 10 6 7.6843 1.4080 -1.6515 11 7 8.5208 1.2572 -0.6480 12 14 8.3041 1.2900 -3.4098 13 1 7.1720 1.4958 -4.3485 14 1 9.3360 2.3323 -3.6420 15 1 8.8967 -0.0526 -3.6367 16 16 3.9521 -0.6850 0.0119 17 6 2.2520 -1.1477 0.0058 18 6 1.7466 -2.4718 0.0072 19 8 0.5451 -2.6645 0.0026 20 8 2.5979 -3.5190 0.0127 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 3.7938 3.7424 1.0252 25 1 4.6389 4.0350 -0.5137 26 1 2.9615 3.4396 -0.5188 27 1 6.3669 2.5610 0.5259 28 1 6.0439 0.8107 0.5302 29 1 9.4593 1.0835 -0.8208 30 1 2.1605 -4.3814 0.0137 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087656461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:46 Heat of formation + Delta-G solvation = -67.132456 kcal Electronic energy + Delta-G solvation = -16597.894940 eV Core-core repulsion = 13712.167090 eV Total energy + Delta-G solvation = -2885.727850 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.48770 -40.45754 -38.07613 -36.90297 -34.85823 -32.33149 -29.92874 -29.76335 -27.93620 -25.52920 -23.89871 -22.79297 -20.34018 -19.62717 -18.79927 -18.36856 -17.62033 -17.00539 -16.90400 -16.32003 -16.03055 -15.37366 -14.86090 -14.65828 -14.20584 -14.07701 -13.79436 -13.41712 -13.37114 -13.16538 -12.82626 -12.68134 -12.50834 -12.25506 -12.01237 -11.83727 -11.48412 -10.88376 -10.73980 -10.67089 -10.23030 -8.64329 -8.22002 -6.45865 -0.57785 0.15073 0.86003 1.38121 1.38554 1.42683 1.51998 1.90116 2.10346 2.36529 2.50125 3.01721 3.39531 4.04581 4.28021 4.58559 4.62100 4.72035 4.76481 4.81823 4.90450 4.94809 4.99198 5.27950 5.52358 5.61625 5.76803 5.86472 6.10312 6.60566 6.80544 7.02267 7.26340 8.76423 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.006619 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.583999 B = 4229.535786 C = 4893.477653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.230 3.770 3 N -0.583 5.583 4 C 0.335 3.665 5 N -0.546 5.546 6 C 0.096 3.904 7 C 0.253 3.747 8 C -0.552 4.552 9 H 0.055 0.945 10 C 0.026 3.974 11 N -0.916 5.916 12 Si 0.959 3.041 13 H -0.271 1.271 14 H -0.273 1.273 15 H -0.277 1.277 16 S 0.164 5.836 17 C -0.416 4.416 18 C 0.576 3.424 19 O -0.543 6.543 20 O -0.508 6.508 21 H 0.092 0.908 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.271 0.729 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 -2.642 1.556 10.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 N -0.311 5.311 4 C -0.032 4.032 5 N -0.256 5.256 6 C -0.047 4.047 7 C 0.133 3.867 8 C -0.591 4.591 9 H 0.074 0.926 10 C -0.175 4.175 11 N -0.555 5.555 12 Si 0.783 3.217 13 H -0.196 1.196 14 H -0.199 1.199 15 H -0.203 1.203 16 S 0.416 5.584 17 C -0.540 4.540 18 C 0.424 3.576 19 O -0.438 6.438 20 O -0.320 6.320 21 H 0.111 0.889 22 H 0.115 0.885 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.884 -2.136 1.619 9.279 hybrid contribution -0.299 -0.493 -0.775 0.966 sum -9.183 -2.629 0.844 9.589 Atomic orbital electron populations 1.20732 0.84338 1.04796 1.04384 1.21084 0.98815 0.84261 0.87374 1.66249 1.02076 1.31584 1.31230 1.24104 0.90938 0.94443 0.93749 1.46848 1.05387 1.03926 1.69468 1.21848 1.00731 0.79594 1.02568 1.19390 0.72629 0.97438 0.97247 1.21590 0.94126 1.51035 0.92330 0.92633 1.25634 0.96610 0.93984 1.01293 1.69990 1.04729 1.48181 1.32587 0.85491 0.78364 0.78125 0.79672 1.19552 1.19860 1.20255 1.84536 1.04251 0.97111 1.72520 1.23142 0.96895 0.96544 1.37441 1.17551 0.83708 0.84303 0.72005 1.90834 1.16138 1.86331 1.50495 1.85071 1.41433 1.19338 1.86196 0.88922 0.88536 0.89224 0.91204 0.90070 0.90392 0.93705 0.95559 0.91942 0.71335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 9.67 71.23 0.69 -1.56 16 2 C 0.23 7.95 6.83 42.38 0.29 8.24 16 3 N -0.58 -21.86 9.71 -188.48 -1.83 -23.69 16 4 C 0.34 13.45 7.71 179.43 1.38 14.84 16 5 N -0.55 -22.01 2.94 -740.61 -2.18 -24.18 16 6 C 0.10 3.11 10.54 127.77 1.35 4.46 16 7 C 0.25 11.76 5.11 85.63 0.44 12.20 16 8 C -0.55 -28.05 9.39 25.60 0.24 -27.81 16 9 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 10 C 0.03 1.35 5.46 84.66 0.46 1.81 16 11 N -0.92 -49.31 13.29 21.45 0.28 -49.02 16 12 Si 0.96 41.06 29.54 68.60 2.03 43.08 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 16 S 0.16 6.42 21.40 -56.49 -1.21 5.21 16 17 C -0.42 -14.87 6.32 22.80 0.14 -14.73 16 18 C 0.58 18.52 8.08 68.68 0.56 19.07 16 19 O -0.54 -17.90 14.89 19.22 0.29 -17.61 16 20 O -0.51 -13.50 13.35 -58.69 -0.78 -14.28 16 21 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.10 2.62 5.99 -2.38 -0.01 2.61 16 23 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 24 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 26 H 0.08 2.41 7.59 -2.39 -0.02 2.40 16 27 H 0.05 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.03 1.31 7.01 -2.39 -0.02 1.29 16 29 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.43 6.53 8.98 -74.06 -0.67 5.87 16 Total: -1.00 -60.15 281.81 2.66 -57.49 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.52 Total: 6.50 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.55 Total: 16.51 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -3.72 Total: -96.89 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.50 Total: -31.90 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.21 Total: 5.21 kcal Total: -60.15 2.66 -57.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087656461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.645 kcal (2) G-P(sol) polarization free energy of solvation -60.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds