Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47252 * 2 1 4 4 C 1.50697 * 109.47395 * 120.00406 * 2 1 3 5 5 H 1.08006 * 120.00149 * 119.99778 * 4 2 1 6 6 C 1.37874 * 119.99913 * 300.00254 * 4 2 1 7 7 N 1.31517 * 119.99911 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00163 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47192 * 119.99662 * 8 6 4 11 11 H 1.48498 * 109.47321 * 239.99710 * 8 6 4 12 12 N 1.46510 * 109.47156 * 240.00444 * 2 1 3 13 13 C 1.46495 * 119.99749 * 300.00151 * 12 2 1 14 14 C 1.34770 * 119.99906 * 120.00012 * 12 2 1 15 15 O 1.21669 * 120.00386 * 3.55631 * 14 12 2 16 16 C 1.46881 * 119.99781 * 183.56291 * 14 12 2 17 17 N 1.30702 * 126.10671 * 352.69333 * 16 14 12 18 18 N 1.26267 * 116.34627 * 180.02562 * 17 16 14 19 19 C 1.30744 * 117.54432 * 359.97438 * 18 17 16 20 20 N 1.37964 * 125.57786 * 180.02562 * 19 18 17 21 21 S 1.71267 * 108.84066 * 0.02562 * 19 18 17 22 22 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46700 * 299.99518 * 1 2 3 24 24 H 1.09002 * 109.46999 * 59.99759 * 1 2 3 25 25 H 0.97000 * 119.99770 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47102 * 263.96173 * 13 12 2 27 27 H 1.09009 * 109.47588 * 23.95534 * 13 12 2 28 28 H 1.08999 * 109.47168 * 143.95766 * 13 12 2 29 29 H 0.96997 * 119.99685 * 179.97438 * 20 19 18 30 30 H 0.96998 * 120.00057 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8160 12 7 2.0184 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.1406 1.1088 -1.8592 16 6 3.2181 -0.7030 -3.3208 17 7 3.0304 -1.9612 -3.6208 18 7 3.4741 -2.3427 -4.7397 19 6 4.0735 -1.4534 -5.4875 20 7 4.6175 -1.6878 -6.7336 21 16 4.0730 0.0500 -4.6671 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7089 1.1611 3.4844 26 1 2.4678 -2.7351 -1.0668 27 1 0.7434 -2.3285 -0.8947 28 1 1.5187 -2.2593 -2.4955 29 1 5.0450 -0.9655 -7.2197 30 1 4.5724 -2.5748 -7.1234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087698068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = 47.508578 kcal Electronic energy + Delta-G solvation = -16788.924888 eV Core-core repulsion = 13940.460997 eV Total energy + Delta-G solvation = -2848.463891 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98716 -38.87059 -35.57301 -35.37844 -32.87743 -30.62759 -28.85199 -26.55436 -25.78511 -25.17682 -22.78073 -20.84726 -19.54532 -18.92373 -17.23922 -16.69084 -16.31321 -15.85676 -15.44805 -14.93926 -14.44911 -14.22678 -13.47093 -12.95904 -12.59158 -12.33821 -11.88448 -11.57648 -11.43044 -11.04913 -10.78059 -10.74401 -10.59118 -10.21625 -10.17127 -9.98914 -9.63750 -9.29948 -9.12512 -8.50468 -8.41899 -7.61517 -6.05618 -4.13066 0.40353 0.60388 1.30601 2.45035 3.05502 3.29310 3.37068 3.41301 3.65132 3.89922 4.41794 4.65075 4.83132 5.25693 5.37201 6.10710 6.36302 6.43432 6.60655 6.79080 6.84784 6.91732 7.04487 7.38917 7.47215 7.72460 8.00328 8.17359 8.43797 8.59380 8.77671 8.95456 9.52998 10.99922 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.041446 B = 0.005290 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.418780 B = 5291.688931 C = 5424.579365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.256 3.744 3 H 0.067 0.933 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.559 5.559 13 C 0.079 3.921 14 C 0.583 3.417 15 O -0.543 6.543 16 C -0.057 4.057 17 N -0.174 5.174 18 N -0.350 5.350 19 C 0.252 3.748 20 N -0.801 5.801 21 S 0.176 5.824 22 H 0.033 0.967 23 H 0.096 0.904 24 H 0.013 0.987 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.418 0.582 30 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -3.867 -16.957 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.084 0.916 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.289 5.289 13 C -0.065 4.065 14 C 0.365 3.635 15 O -0.421 6.421 16 C -0.340 4.340 17 N -0.017 5.017 18 N -0.201 5.201 19 C -0.120 4.120 20 N -0.354 5.354 21 S 0.413 5.587 22 H 0.052 0.948 23 H 0.115 0.885 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.249 0.751 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.862 -3.437 -16.608 17.643 hybrid contribution 0.491 -0.760 0.438 1.005 sum 5.353 -4.198 -16.170 17.542 Atomic orbital electron populations 1.22116 0.97718 0.99744 1.01038 1.19137 0.91152 0.94589 0.79466 0.91556 1.21346 1.31823 1.13033 0.90018 0.91978 1.24882 0.94925 0.94976 0.98954 1.69888 1.36452 1.22639 1.23694 0.86408 0.78605 0.79611 0.82603 1.19747 1.20920 1.20918 1.48157 1.46298 1.12382 1.22021 1.21989 1.01042 0.81566 1.01853 1.16478 0.80532 0.85526 0.80983 1.90821 1.57336 1.17226 1.76740 1.29359 1.08510 0.93669 1.02480 1.72014 1.12420 1.10358 1.06879 1.71716 1.18694 1.28193 1.01541 1.26117 0.96900 0.95253 0.93766 1.41187 1.63457 1.16233 1.14493 1.84826 1.55167 1.07669 1.11083 0.94777 0.88515 0.96804 0.92717 0.92943 0.90905 0.90198 0.75102 0.75170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.96 37.16 0.33 -3.23 16 2 C 0.26 6.67 2.62 -69.08 -0.18 6.49 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.60 16 4 C -0.52 -14.40 8.37 -34.44 -0.29 -14.68 16 5 H 0.06 1.71 7.65 -52.48 -0.40 1.31 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.56 -12.77 2.75 -176.73 -0.49 -13.25 16 13 C 0.08 1.54 8.80 59.84 0.53 2.07 16 14 C 0.58 12.98 7.65 -12.77 -0.10 12.88 16 15 O -0.54 -13.54 16.31 5.22 0.09 -13.45 16 16 C -0.06 -1.03 7.26 -14.54 -0.11 -1.14 16 17 N -0.17 -3.07 8.17 32.82 0.27 -2.80 16 18 N -0.35 -5.41 11.65 29.88 0.35 -5.06 16 19 C 0.25 3.01 8.72 -87.44 -0.76 2.25 16 20 N -0.80 -5.38 9.04 29.87 0.27 -5.11 16 21 S 0.18 2.35 23.15 -107.50 -2.49 -0.14 16 22 H 0.03 0.76 6.67 -51.93 -0.35 0.41 16 23 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.38 6.44 -51.92 -0.33 1.05 16 28 H 0.08 1.44 5.38 -51.93 -0.28 1.16 16 29 H 0.42 1.53 8.95 -40.82 -0.37 1.16 16 30 H 0.42 2.14 8.95 -40.82 -0.37 1.78 16 LS Contribution 272.54 15.07 4.11 4.11 Total: -1.00 -32.53 272.54 -5.71 -38.24 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -2.75 Total: -0.64 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.67 Total: 6.33 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 1.03 Total: -50.72 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.49 Total: -0.14 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.53 -5.71 -38.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087698068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.748 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds