Wall clock time and date at job start Mon Mar 30 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47252 * 2 1 4 4 C 1.50697 * 109.47395 * 120.00406 * 2 1 3 5 5 H 1.08006 * 120.00149 * 119.99778 * 4 2 1 6 6 C 1.37874 * 119.99913 * 300.00254 * 4 2 1 7 7 N 1.31517 * 119.99911 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00163 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47047 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47192 * 119.99662 * 8 6 4 11 11 H 1.48498 * 109.47321 * 239.99710 * 8 6 4 12 12 N 1.46510 * 109.47156 * 240.00444 * 2 1 3 13 13 C 1.46495 * 119.99749 * 300.00151 * 12 2 1 14 14 C 1.34770 * 119.99906 * 120.00012 * 12 2 1 15 15 O 1.21669 * 120.00386 * 3.55631 * 14 12 2 16 16 C 1.46881 * 119.99781 * 183.56291 * 14 12 2 17 17 N 1.30702 * 126.10671 * 352.69333 * 16 14 12 18 18 N 1.26267 * 116.34627 * 180.02562 * 17 16 14 19 19 C 1.30744 * 117.54432 * 359.97438 * 18 17 16 20 20 N 1.37964 * 125.57786 * 180.02562 * 19 18 17 21 21 S 1.71267 * 108.84066 * 0.02562 * 19 18 17 22 22 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46700 * 299.99518 * 1 2 3 24 24 H 1.09002 * 109.46999 * 59.99759 * 1 2 3 25 25 H 0.97000 * 119.99770 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47102 * 263.96173 * 13 12 2 27 27 H 1.09009 * 109.47588 * 23.95534 * 13 12 2 28 28 H 1.08999 * 109.47168 * 143.95766 * 13 12 2 29 29 H 0.96997 * 119.99685 * 179.97438 * 20 19 18 30 30 H 0.96998 * 120.00057 * 359.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8160 12 7 2.0184 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.1406 1.1088 -1.8592 16 6 3.2181 -0.7030 -3.3208 17 7 3.0304 -1.9612 -3.6208 18 7 3.4741 -2.3427 -4.7397 19 6 4.0735 -1.4534 -5.4875 20 7 4.6175 -1.6878 -6.7336 21 16 4.0730 0.0500 -4.6671 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7089 1.1611 3.4844 26 1 2.4678 -2.7351 -1.0668 27 1 0.7434 -2.3285 -0.8947 28 1 1.5187 -2.2593 -2.4955 29 1 5.0450 -0.9655 -7.2197 30 1 4.5724 -2.5748 -7.1234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087698068.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:29 Heat of formation + Delta-G solvation = 23.041342 kcal Electronic energy + Delta-G solvation = -16789.985867 eV Core-core repulsion = 13940.460997 eV Total energy + Delta-G solvation = -2849.524870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.20332 -40.56014 -37.23789 -36.50035 -34.82635 -32.19288 -30.47746 -27.97858 -27.34815 -27.11682 -24.27012 -22.39394 -20.66809 -20.44199 -18.68374 -18.36730 -17.59673 -17.22295 -17.12607 -16.37003 -16.13479 -15.84634 -14.96299 -14.53115 -14.42912 -14.02827 -13.49359 -13.10041 -12.98210 -12.78986 -12.68933 -12.66356 -12.19940 -12.13019 -11.87088 -11.26603 -11.17658 -10.92033 -10.77707 -10.51929 -9.55132 -9.35031 -8.14200 -6.30192 -0.79243 -0.49135 0.15916 1.20448 1.42800 1.44260 1.56167 2.04735 2.07893 2.38613 2.50716 3.13911 3.22666 3.77162 4.03917 4.50585 4.77750 4.81116 4.90335 5.04185 5.14414 5.43311 5.56376 5.65586 5.70221 5.98745 6.14064 6.36871 6.62312 6.74339 7.08186 7.40552 7.48597 8.90696 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.041446 B = 0.005290 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.418780 B = 5291.688931 C = 5424.579365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.571 5.571 13 C 0.087 3.913 14 C 0.581 3.419 15 O -0.585 6.585 16 C -0.112 4.112 17 N -0.171 5.171 18 N -0.374 5.374 19 C 0.270 3.730 20 N -0.763 5.763 21 S 0.228 5.772 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.024 0.976 25 H 0.266 0.734 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.437 0.563 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -5.297 -18.877 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.039 0.961 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.791 3.209 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.300 5.300 13 C -0.055 4.055 14 C 0.366 3.634 15 O -0.465 6.465 16 C -0.394 4.394 17 N -0.016 5.016 18 N -0.228 5.228 19 C -0.103 4.103 20 N -0.317 5.317 21 S 0.464 5.536 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.272 0.728 30 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.822 -4.880 -18.618 20.108 hybrid contribution 0.323 -0.329 0.762 0.890 sum 6.145 -5.209 -17.856 19.589 Atomic orbital electron populations 1.21908 0.96480 1.00404 1.00430 1.18776 0.92070 0.92519 0.80761 0.96123 1.21544 1.32146 1.13070 0.91075 0.92500 1.25681 0.94979 0.95615 1.01791 1.70010 1.37109 1.23689 1.24505 0.85394 0.78268 0.78421 0.78842 1.19369 1.20838 1.19771 1.48107 1.46888 1.13503 1.21548 1.22041 1.00886 0.79659 1.02950 1.16865 0.79509 0.85121 0.81935 1.90772 1.58752 1.19023 1.77999 1.28512 1.12886 0.94817 1.03176 1.71928 1.11688 1.10233 1.07768 1.71696 1.20738 1.28802 1.01601 1.26268 0.94969 0.94519 0.94526 1.41373 1.60404 1.17841 1.12117 1.84557 1.53833 1.06738 1.08468 0.93344 0.90713 0.95703 0.92464 0.93124 0.90704 0.88533 0.72788 0.73525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 8.96 71.98 0.64 -5.96 16 2 C 0.26 14.06 2.62 44.24 0.12 14.17 16 3 H 0.02 1.30 6.90 -2.39 -0.02 1.28 16 4 C -0.54 -30.40 8.37 25.60 0.21 -30.18 16 5 H 0.06 3.18 7.65 -2.91 -0.02 3.16 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -52.83 11.32 21.45 0.24 -52.58 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.57 -26.84 2.75 -831.28 -2.29 -29.13 16 13 C 0.09 3.41 8.80 127.77 1.12 4.54 16 14 C 0.58 26.68 7.65 86.51 0.66 27.34 16 15 O -0.58 -30.47 16.31 -4.25 -0.07 -30.54 16 16 C -0.11 -4.05 7.26 87.13 0.63 -3.42 16 17 N -0.17 -5.85 8.17 -50.06 -0.41 -6.26 16 18 N -0.37 -10.70 11.65 -59.39 -0.69 -11.39 16 19 C 0.27 5.59 8.72 179.24 1.56 7.16 16 20 N -0.76 -6.81 9.04 -59.40 -0.54 -7.35 16 21 S 0.23 5.65 23.15 -56.49 -1.31 4.35 16 22 H 0.05 2.19 6.67 -2.39 -0.02 2.17 16 23 H 0.07 4.03 6.07 -2.39 -0.01 4.01 16 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 2.83 6.44 -2.38 -0.02 2.81 16 28 H 0.10 3.45 5.38 -2.39 -0.01 3.44 16 29 H 0.44 1.01 8.95 -92.71 -0.83 0.18 16 30 H 0.43 2.39 8.95 -92.71 -0.83 1.56 16 Total: -1.00 -72.84 272.54 1.93 -70.91 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -0.45 Total: 0.87 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.41 Total: 15.16 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.68 Total: -106.70 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.07 Total: -30.54 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.31 Total: 4.35 kcal Total: -72.84 1.93 -70.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087698068.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.954 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds