Wall clock time and date at job start Mon Mar 30 2020 04:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65599 * 119.99789 * 2 1 4 4 O 1.42104 * 106.40395 * 311.45607 * 3 2 1 5 5 O 1.42105 * 106.39914 * 178.53901 * 3 2 1 6 6 N 1.65594 * 107.21871 * 65.00048 * 3 2 1 7 7 C 1.38856 * 120.00253 * 65.00383 * 6 3 2 8 8 C 1.39560 * 119.84871 * 134.99845 * 7 6 3 9 9 C 1.36340 * 120.16423 * 180.25035 * 8 7 6 10 10 C 1.40883 * 119.83215 * 359.50104 * 9 8 7 11 11 C 1.41139 * 120.15370 * 180.25144 * 10 9 8 12 12 H 1.07999 * 119.99929 * 204.77432 * 11 10 9 13 13 C 1.39863 * 120.00163 * 24.76810 * 11 10 9 14 14 N 1.30899 * 119.99869 * 17.81999 * 13 11 10 15 15 Si 1.86797 * 120.00303 * 197.81467 * 13 11 10 16 16 H 1.48508 * 109.46979 * 90.00038 * 15 13 11 17 17 H 1.48494 * 109.47486 * 210.00221 * 15 13 11 18 18 H 1.48502 * 109.47152 * 330.00564 * 15 13 11 19 19 C 1.40886 * 119.69183 * 0.51716 * 10 9 8 20 20 C 1.36336 * 119.83392 * 359.73283 * 19 10 9 21 21 H 1.09006 * 109.47225 * 300.00027 * 1 2 3 22 22 H 1.09007 * 109.47359 * 59.99768 * 1 2 3 23 23 H 1.08998 * 109.47204 * 180.02562 * 1 2 3 24 24 H 0.96999 * 119.99807 * 180.02562 * 2 1 3 25 25 H 0.97005 * 120.00081 * 244.98989 * 6 3 2 26 26 H 1.08002 * 119.91759 * 359.97438 * 8 7 6 27 27 H 1.08001 * 120.08325 * 179.74615 * 9 8 7 28 28 H 0.97001 * 120.00319 * 179.97438 * 14 13 11 29 29 H 1.08000 * 120.08421 * 179.71452 * 19 10 9 30 30 H 1.08008 * 119.91973 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7120 2.2329 -1.0217 5 8 3.6738 1.1003 0.0348 6 7 1.9591 2.1929 1.4335 7 6 2.3769 1.6286 2.6315 8 6 2.9763 2.4294 3.6047 9 6 3.3936 1.8811 4.7813 10 6 3.2087 0.5046 5.0175 11 6 3.6332 -0.0690 6.2352 12 1 3.8695 -1.1218 6.2828 13 6 3.7479 0.7258 7.3803 14 7 3.1482 1.8882 7.4329 15 14 4.7569 0.1288 8.8345 16 1 6.1627 0.5823 8.6812 17 1 4.1918 0.6842 10.0905 18 1 4.7185 -1.3547 8.8880 19 6 2.6031 -0.2978 4.0304 20 6 2.1955 0.2632 2.8565 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.9500 -0.8401 -0.0004 25 1 1.4719 3.0317 1.4364 26 1 3.1141 3.4851 3.4236 27 1 3.8610 2.5012 5.5318 28 1 3.2274 2.4393 8.2272 29 1 2.4625 -1.3545 4.2030 30 1 1.7315 -0.3507 2.0986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126936355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:16 Heat of formation + Delta-G solvation = -81.318287 kcal Electronic energy + Delta-G solvation = -16896.991315 eV Core-core repulsion = 14010.648322 eV Total energy + Delta-G solvation = -2886.342994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82527 -38.30320 -36.99197 -36.55926 -35.88079 -34.54855 -31.44493 -30.51704 -26.85835 -26.51150 -23.18433 -22.62172 -20.81843 -19.35348 -19.04164 -18.49799 -18.29558 -17.09174 -16.80545 -15.85330 -15.76169 -15.28415 -14.75850 -14.55851 -13.89765 -13.87591 -13.74517 -13.69680 -13.29219 -13.18297 -13.13664 -12.77489 -12.67673 -12.50213 -12.21741 -11.95227 -11.60587 -11.21640 -10.76111 -10.44638 -9.50158 -9.00330 -8.63344 -6.26993 -0.39719 0.88719 1.12413 1.41396 1.52018 1.53947 1.95756 2.22405 2.56371 2.73112 3.49814 3.71461 4.18455 4.37200 4.38226 4.55914 4.69416 4.94086 4.99887 5.06301 5.17029 5.22123 5.38085 5.62959 5.72318 6.06024 6.09093 6.14149 6.24646 6.39600 6.68102 6.93715 7.03010 8.32947 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.048287 B = 0.005284 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.731754 B = 5298.047615 C = 5473.229822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.122 6.122 3 S 2.812 3.188 4 O -1.005 7.005 5 O -1.012 7.012 6 N -1.044 6.044 7 C 0.020 3.980 8 C -0.113 4.113 9 C -0.174 4.174 10 C 0.072 3.928 11 C -0.492 4.492 12 H 0.079 0.921 13 C 0.035 3.965 14 N -0.823 5.823 15 Si 0.981 3.019 16 H -0.265 1.265 17 H -0.269 1.269 18 H -0.257 1.257 19 C -0.218 4.218 20 C -0.123 4.123 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.109 0.891 24 H 0.426 0.574 25 H 0.421 0.579 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.289 0.711 29 H 0.110 0.890 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 -2.609 -7.679 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.886 5.886 3 S 2.818 3.182 4 O -0.988 6.988 5 O -0.995 6.995 6 N -0.797 5.797 7 C -0.076 4.076 8 C -0.134 4.134 9 C -0.194 4.194 10 C 0.069 3.931 11 C -0.522 4.522 12 H 0.097 0.903 13 C -0.180 4.180 14 N -0.449 5.449 15 Si 0.802 3.198 16 H -0.190 1.190 17 H -0.193 1.193 18 H -0.181 1.181 19 C -0.238 4.238 20 C -0.144 4.144 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.128 0.872 24 H 0.262 0.738 25 H 0.258 0.742 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.737 -2.059 -8.304 9.779 hybrid contribution 0.164 -0.051 1.152 1.165 sum -4.573 -2.110 -7.151 8.747 Atomic orbital electron populations 1.21701 0.76964 1.06072 1.02148 1.55479 1.17313 1.24309 1.91536 1.00989 0.72283 0.73061 0.71856 1.93566 1.79570 1.69979 1.55717 1.93582 1.34439 1.84390 1.87120 1.52699 1.70969 1.36271 1.19805 1.16781 1.09556 0.92740 0.88489 1.20655 0.99351 0.98915 0.94522 1.20954 1.05312 0.96339 0.96829 1.18051 0.89380 0.92517 0.93171 1.19813 1.41093 0.97154 0.94112 0.90268 1.26741 0.94127 0.94331 1.02783 1.69891 1.32953 1.11521 1.30486 0.85208 0.78613 0.79791 0.76143 1.19000 1.19339 1.18075 1.20822 1.07342 0.99467 0.96192 1.20913 1.01579 0.93598 0.98348 0.91980 0.91262 0.87216 0.73781 0.74245 0.87055 0.87725 0.90082 0.87211 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 11.00 127.77 1.41 2.73 16 2 N -1.12 -25.49 4.06 -206.53 -0.84 -26.33 16 3 S 2.81 87.11 5.81 -56.49 -0.33 86.78 16 4 O -1.00 -33.58 17.86 -128.00 -2.29 -35.87 16 5 O -1.01 -39.84 17.85 -128.00 -2.28 -42.13 16 6 N -1.04 -33.66 5.78 -51.07 -0.29 -33.96 16 7 C 0.02 0.80 6.06 38.67 0.23 1.03 16 8 C -0.11 -5.10 9.90 22.15 0.22 -4.88 16 9 C -0.17 -8.95 8.64 22.47 0.19 -8.76 16 10 C 0.07 3.75 5.57 -21.27 -0.12 3.63 16 11 C -0.49 -25.68 9.03 23.38 0.21 -25.47 16 12 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 13 C 0.04 1.73 5.13 85.23 0.44 2.17 16 14 N -0.82 -41.79 10.96 21.81 0.24 -41.55 16 15 Si 0.98 37.18 29.59 68.60 2.03 39.21 16 16 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 19 C -0.22 -10.06 9.74 22.47 0.22 -9.85 16 20 C -0.12 -4.97 9.31 22.15 0.21 -4.76 16 21 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.07 1.13 8.10 -2.38 -0.02 1.11 16 23 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.43 8.30 8.82 -96.74 -0.85 7.45 16 25 H 0.42 11.47 8.95 -96.74 -0.87 10.60 16 26 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 27 H 0.10 5.63 6.17 -2.91 -0.02 5.61 16 28 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 29 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.14 4.40 5.40 -2.91 -0.02 4.39 16 Total: -1.00 -66.62 273.67 -1.28 -67.90 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.53 Total: 30.10 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 3.01 Total: -44.16 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -0.89 Total: -101.84 kcal Atomic # 8 Polarization: -73.42 SS G_CDS: -4.57 Total: -77.99 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 16 Polarization: 87.11 SS G_CDS: -0.33 Total: 86.78 kcal Total: -66.62 -1.28 -67.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126936355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.418 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds