Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35679 * 116.99677 * 2 1 4 4 C 1.39332 * 119.81882 * 359.97438 * 3 2 1 5 5 C 1.36422 * 120.18335 * 180.02562 * 4 3 2 6 6 C 1.40843 * 119.81292 * 359.97438 * 5 4 3 7 7 C 1.41218 * 120.18154 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99790 * 152.99519 * 7 6 5 9 9 C 1.39889 * 119.99461 * 332.99543 * 7 6 5 10 10 N 1.30879 * 120.00238 * 344.15748 * 9 7 6 11 11 Si 1.86803 * 119.99631 * 164.16318 * 9 7 6 12 12 H 1.48501 * 109.47123 * 59.99831 * 11 9 7 13 13 H 1.48504 * 109.46778 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47065 * 299.99687 * 11 9 7 15 15 C 1.40824 * 119.64133 * 359.97438 * 6 5 4 16 16 S 1.76200 * 120.09525 * 180.02562 * 15 6 5 17 17 C 1.81402 * 104.45043 * 295.00726 * 16 15 6 18 18 O 1.42093 * 104.27932 * 178.93134 * 16 15 6 19 19 O 1.42104 * 104.27719 * 51.07539 * 16 15 6 20 20 C 1.36452 * 119.80959 * 0.28284 * 15 6 5 21 21 H 1.09006 * 109.46968 * 60.00232 * 1 2 3 22 22 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47010 * 299.99922 * 1 2 3 24 24 H 1.08004 * 119.90432 * 0.02562 * 4 3 2 25 25 H 1.07997 * 120.08801 * 179.97438 * 5 4 3 26 26 H 0.96999 * 120.00265 * 180.02562 * 10 9 7 27 27 H 1.09005 * 109.46866 * 291.62173 * 17 16 15 28 28 H 1.09000 * 109.47180 * 51.62191 * 17 16 15 29 29 H 1.08999 * 109.46995 * 171.62657 * 17 16 15 30 30 H 1.08006 * 119.90405 * 179.70330 * 20 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2824 2.3750 -0.0005 5 6 1.8939 3.5945 -0.0011 6 6 3.3001 3.6727 -0.0005 7 6 3.9413 4.9309 -0.0016 8 1 4.9287 5.0341 0.4234 9 6 3.2972 6.0435 -0.5532 10 7 2.2599 5.8787 -1.3341 11 14 3.9180 7.7644 -0.1754 12 1 5.3227 7.8967 -0.6386 13 1 3.0699 8.7615 -0.8768 14 1 3.8550 8.0029 1.2889 15 6 4.0635 2.4892 0.0011 16 16 5.8235 2.5731 0.0025 17 6 6.2416 3.3350 -1.5898 18 8 6.2390 1.2145 0.0297 19 8 6.1315 3.4549 1.0734 20 6 3.4362 1.2774 -0.0037 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2041 2.3132 -0.0005 25 1 1.3013 4.4974 -0.0019 26 1 1.8135 6.6501 -1.7169 27 1 5.9988 2.6447 -2.3977 28 1 5.6701 4.2549 -1.7136 29 1 7.3072 3.5630 -1.6147 30 1 4.0201 0.3689 -0.0073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216358192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = -91.343376 kcal Electronic energy + Delta-G solvation = -17280.617783 eV Core-core repulsion = 14361.547318 eV Total energy + Delta-G solvation = -2919.070465 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.86876 -36.65737 -36.08415 -34.95552 -33.69245 -30.19502 -29.78006 -28.55287 -26.97737 -24.87648 -21.79736 -21.10963 -18.18877 -17.76431 -17.04254 -15.85905 -15.25833 -15.06267 -14.96185 -14.87071 -14.53636 -14.09586 -12.87449 -12.75164 -12.59257 -12.48682 -12.07272 -11.87102 -11.73425 -11.38180 -11.30667 -11.15503 -11.11171 -10.75393 -10.54989 -10.15725 -10.07684 -10.00294 -9.42235 -9.14964 -8.15546 -7.29741 -7.11942 -4.74053 1.16414 2.25218 2.67856 2.92571 2.96786 3.07455 3.71669 3.99233 4.26727 4.29807 4.71446 5.11027 5.30635 5.52614 5.59040 5.64935 5.81093 5.88214 5.97300 6.11236 6.42247 6.57982 6.73374 6.96864 6.98598 7.31480 7.55490 7.62211 7.68248 8.10618 8.33249 8.43952 8.66795 9.79429 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.010599 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.620171 B = 2641.195908 C = 3940.630660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C -0.018 4.018 4 C -0.140 4.140 5 C -0.128 4.128 6 C 0.168 3.832 7 C -0.479 4.479 8 H 0.114 0.886 9 C 0.079 3.921 10 N -0.778 5.778 11 Si 0.912 3.088 12 H -0.258 1.258 13 H -0.276 1.276 14 H -0.257 1.257 15 C -0.735 4.735 16 S 2.514 3.486 17 C -0.654 4.654 18 O -0.976 6.976 19 O -0.952 6.952 20 C -0.025 4.025 21 H 0.043 0.957 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.103 0.897 25 H 0.127 0.873 26 H 0.289 0.711 27 H 0.119 0.881 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -0.729 -1.960 2.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C -0.063 4.063 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.164 3.836 7 C -0.507 4.507 8 H 0.131 0.869 9 C -0.142 4.142 10 N -0.402 5.402 11 Si 0.735 3.265 12 H -0.182 1.182 13 H -0.201 1.201 14 H -0.181 1.181 15 C -0.829 4.829 16 S 2.699 3.301 17 C -0.803 4.803 18 O -0.973 6.973 19 O -0.949 6.949 20 C -0.045 4.045 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.061 0.939 24 H 0.120 0.880 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.131 0.869 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.007 -1.048 -1.483 1.816 hybrid contribution -0.992 1.241 -0.609 1.701 sum -0.999 0.193 -2.092 2.326 Atomic orbital electron populations 1.22738 0.80803 1.01962 1.00351 1.85854 1.19285 1.28214 1.91336 1.18625 0.91898 0.83143 1.12591 1.20873 0.97993 0.93265 1.03756 1.21124 0.95156 0.95983 1.02505 1.17034 0.91752 0.90342 0.84466 1.20350 1.05274 0.92257 1.32842 0.86869 1.26040 0.93743 1.02306 0.92128 1.69811 1.16320 1.34147 1.19906 0.86257 0.80130 0.79477 0.80606 1.18201 1.20066 1.18056 1.29084 1.22022 0.98454 1.33312 1.04088 0.75427 0.73812 0.76779 1.30175 1.10356 1.15904 1.23859 1.93441 1.82661 1.33877 1.87348 1.93484 1.84509 1.67078 1.49877 1.19220 0.91107 0.96183 0.97949 0.93835 0.89801 0.93885 0.87951 0.85551 0.90026 0.86173 0.83827 0.86932 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.33 -6.83 10.48 -18.74 -0.20 -7.02 16 3 C -0.02 -0.42 6.71 -38.78 -0.26 -0.68 16 4 C -0.14 -3.13 8.96 -39.83 -0.36 -3.48 16 5 C -0.13 -3.10 8.62 -39.25 -0.34 -3.44 16 6 C 0.17 4.18 5.55 -106.80 -0.59 3.59 16 7 C -0.48 -11.56 6.72 -37.83 -0.25 -11.82 16 8 H 0.11 2.70 5.47 -52.49 -0.29 2.41 16 9 C 0.08 1.79 5.16 -17.34 -0.09 1.70 16 10 N -0.78 -17.82 11.00 55.54 0.61 -17.21 16 11 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 12 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 13 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 14 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 15 C -0.73 -17.36 5.60 -39.25 -0.22 -17.58 16 16 S 2.51 52.20 5.22 -107.50 -0.56 51.64 16 17 C -0.65 -10.84 10.64 101.05 1.07 -9.76 16 18 O -0.98 -21.65 16.72 -57.54 -0.96 -22.62 16 19 O -0.95 -22.12 15.66 -57.54 -0.90 -23.02 16 20 C -0.02 -0.58 9.39 -39.83 -0.37 -0.95 16 21 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 22 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 24 H 0.10 1.98 6.27 -52.48 -0.33 1.65 16 25 H 0.13 3.05 6.27 -52.49 -0.33 2.72 16 26 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 27 H 0.12 1.78 8.14 -51.92 -0.42 1.35 16 28 H 0.14 2.53 6.63 -51.92 -0.34 2.18 16 29 H 0.11 1.51 8.14 -51.92 -0.42 1.08 16 30 H 0.12 2.71 7.18 -52.48 -0.38 2.33 16 LS Contribution 266.97 15.07 4.02 4.02 Total: -1.00 -29.63 266.97 -6.30 -35.92 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -2.86 Total: 6.98 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: -0.42 Total: -40.86 kcal Atomic # 7 Polarization: -17.82 SS G_CDS: 0.61 Total: -17.21 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -2.06 Total: -52.66 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.56 Total: 51.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.63 -6.30 -35.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216358192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.420 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds