Wall clock time and date at job start Mon Mar 30 2020 04:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35679 * 116.99677 * 2 1 4 4 C 1.39332 * 119.81882 * 359.97438 * 3 2 1 5 5 C 1.36422 * 120.18335 * 180.02562 * 4 3 2 6 6 C 1.40843 * 119.81292 * 359.97438 * 5 4 3 7 7 C 1.41218 * 120.18154 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99790 * 152.99519 * 7 6 5 9 9 C 1.39889 * 119.99461 * 332.99543 * 7 6 5 10 10 N 1.30879 * 120.00238 * 344.15748 * 9 7 6 11 11 Si 1.86803 * 119.99631 * 164.16318 * 9 7 6 12 12 H 1.48501 * 109.47123 * 59.99831 * 11 9 7 13 13 H 1.48504 * 109.46778 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47065 * 299.99687 * 11 9 7 15 15 C 1.40824 * 119.64133 * 359.97438 * 6 5 4 16 16 S 1.76200 * 120.09525 * 180.02562 * 15 6 5 17 17 C 1.81402 * 104.45043 * 295.00726 * 16 15 6 18 18 O 1.42093 * 104.27932 * 178.93134 * 16 15 6 19 19 O 1.42104 * 104.27719 * 51.07539 * 16 15 6 20 20 C 1.36452 * 119.80959 * 0.28284 * 15 6 5 21 21 H 1.09006 * 109.46968 * 60.00232 * 1 2 3 22 22 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47010 * 299.99922 * 1 2 3 24 24 H 1.08004 * 119.90432 * 0.02562 * 4 3 2 25 25 H 1.07997 * 120.08801 * 179.97438 * 5 4 3 26 26 H 0.96999 * 120.00265 * 180.02562 * 10 9 7 27 27 H 1.09005 * 109.46866 * 291.62173 * 17 16 15 28 28 H 1.09000 * 109.47180 * 51.62191 * 17 16 15 29 29 H 1.08999 * 109.46995 * 171.62657 * 17 16 15 30 30 H 1.08006 * 119.90405 * 179.70330 * 20 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2824 2.3750 -0.0005 5 6 1.8939 3.5945 -0.0011 6 6 3.3001 3.6727 -0.0005 7 6 3.9413 4.9309 -0.0016 8 1 4.9287 5.0341 0.4234 9 6 3.2972 6.0435 -0.5532 10 7 2.2599 5.8787 -1.3341 11 14 3.9180 7.7644 -0.1754 12 1 5.3227 7.8967 -0.6386 13 1 3.0699 8.7615 -0.8768 14 1 3.8550 8.0029 1.2889 15 6 4.0635 2.4892 0.0011 16 16 5.8235 2.5731 0.0025 17 6 6.2416 3.3350 -1.5898 18 8 6.2390 1.2145 0.0297 19 8 6.1315 3.4549 1.0734 20 6 3.4362 1.2774 -0.0037 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2041 2.3132 -0.0005 25 1 1.3013 4.4974 -0.0019 26 1 1.8135 6.6501 -1.7169 27 1 5.9988 2.6447 -2.3977 28 1 5.6701 4.2549 -1.7136 29 1 7.3072 3.5630 -1.6147 30 1 4.0201 0.3689 -0.0073 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216358192.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:27 Heat of formation + Delta-G solvation = -112.048616 kcal Electronic energy + Delta-G solvation = -17281.515630 eV Core-core repulsion = 14361.547318 eV Total energy + Delta-G solvation = -2919.968312 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.53077 -38.32761 -37.79010 -36.67911 -35.40031 -31.94149 -31.48459 -29.97872 -28.40428 -26.54841 -23.53675 -22.83085 -19.85696 -19.50066 -18.69562 -17.50764 -16.89322 -16.70162 -16.60587 -16.33790 -16.13842 -15.74630 -14.55421 -14.36350 -14.01840 -13.92491 -13.65101 -13.51385 -13.24561 -13.00277 -12.88603 -12.83092 -12.72113 -12.39155 -12.06981 -11.74249 -11.69640 -11.64917 -11.09092 -10.88613 -9.93750 -9.05568 -8.80464 -6.52184 -0.42196 0.47709 0.93635 1.41037 1.50198 1.54340 2.17402 2.35406 2.55496 2.79953 3.09834 3.47443 3.68659 4.21044 4.24722 4.27170 4.43338 4.45192 4.48024 4.72079 4.85062 4.99642 5.09843 5.22112 5.23298 5.54350 5.77336 5.83049 5.91715 6.35075 6.59910 6.68842 6.95917 8.14256 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.010599 C = 0.007104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.620171 B = 2641.195908 C = 3940.630660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.151 4.151 6 C 0.142 3.858 7 C -0.502 4.502 8 H 0.111 0.889 9 C 0.049 3.951 10 N -0.799 5.799 11 Si 0.969 3.031 12 H -0.248 1.248 13 H -0.261 1.261 14 H -0.265 1.265 15 C -0.752 4.752 16 S 2.520 3.480 17 C -0.630 4.630 18 O -0.995 6.995 19 O -0.983 6.983 20 C -0.047 4.047 21 H 0.051 0.949 22 H 0.119 0.881 23 H 0.050 0.950 24 H 0.130 0.870 25 H 0.121 0.879 26 H 0.298 0.702 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 -0.184 -2.913 2.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.262 6.262 3 C -0.067 4.067 4 C -0.158 4.158 5 C -0.171 4.171 6 C 0.138 3.862 7 C -0.530 4.530 8 H 0.128 0.872 9 C -0.170 4.170 10 N -0.423 5.423 11 Si 0.789 3.211 12 H -0.171 1.171 13 H -0.185 1.185 14 H -0.189 1.189 15 C -0.843 4.843 16 S 2.707 3.293 17 C -0.783 4.783 18 O -0.992 6.992 19 O -0.981 6.981 20 C -0.067 4.067 21 H 0.069 0.931 22 H 0.137 0.863 23 H 0.069 0.931 24 H 0.148 0.852 25 H 0.138 0.862 26 H 0.109 0.891 27 H 0.161 0.839 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.041 -0.541 -2.407 2.467 hybrid contribution -1.065 0.969 -0.355 1.483 sum -1.024 0.429 -2.763 2.977 Atomic orbital electron populations 1.23110 0.78015 1.04637 1.01047 1.85835 1.22177 1.27075 1.91126 1.18788 0.92046 0.84141 1.11738 1.21108 0.99438 0.92527 1.02773 1.21203 0.95304 0.96489 1.04071 1.17345 0.92332 0.91177 0.85341 1.20474 1.05625 0.92900 1.33952 0.87181 1.26708 0.93758 1.05092 0.91476 1.69821 1.16860 1.35571 1.20042 0.85417 0.80342 0.75520 0.79863 1.17141 1.18534 1.18928 1.29528 1.23876 0.98154 1.32746 1.03857 0.73992 0.73333 0.78147 1.29948 1.12918 1.15362 1.20069 1.93410 1.82312 1.35207 1.88314 1.93437 1.84356 1.67428 1.52852 1.19465 0.91941 0.96422 0.98826 0.93083 0.86284 0.93118 0.85243 0.86166 0.89081 0.83871 0.84328 0.82868 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 9.80 113.37 1.11 1.88 16 2 O -0.35 -13.95 10.48 -89.97 -0.94 -14.89 16 3 C -0.02 -1.03 6.71 22.79 0.15 -0.88 16 4 C -0.14 -6.23 8.96 22.11 0.20 -6.03 16 5 C -0.15 -7.42 8.62 22.48 0.19 -7.22 16 6 C 0.14 7.17 5.55 -21.28 -0.12 7.05 16 7 C -0.50 -24.36 6.72 23.40 0.16 -24.20 16 8 H 0.11 5.28 5.47 -2.91 -0.02 5.27 16 9 C 0.05 2.20 5.16 85.23 0.44 2.64 16 10 N -0.80 -36.31 11.00 21.82 0.24 -36.07 16 11 Si 0.97 34.23 29.59 68.60 2.03 36.26 16 12 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 13 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 15 C -0.75 -35.99 5.60 22.49 0.13 -35.87 16 16 S 2.52 103.89 5.22 -56.49 -0.29 103.59 16 17 C -0.63 -19.28 10.64 113.37 1.21 -18.07 16 18 O -1.00 -43.96 16.72 -127.65 -2.13 -46.10 16 19 O -0.98 -46.01 15.66 -127.65 -2.00 -48.01 16 20 C -0.05 -2.23 9.39 22.11 0.21 -2.03 16 21 H 0.05 1.39 7.65 -2.38 -0.02 1.37 16 22 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 23 H 0.05 1.37 7.65 -2.39 -0.02 1.36 16 24 H 0.13 4.88 6.27 -2.91 -0.02 4.86 16 25 H 0.12 5.92 6.27 -2.91 -0.02 5.90 16 26 H 0.30 12.09 8.30 -92.71 -0.77 11.32 16 27 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 28 H 0.14 4.60 6.63 -2.39 -0.02 4.58 16 29 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.12 5.60 7.18 -2.91 -0.02 5.58 16 Total: -1.00 -64.05 266.97 1.74 -62.31 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.17 Total: 25.63 kcal Atomic # 6 Polarization: -86.40 SS G_CDS: 3.67 Total: -82.73 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.24 Total: -36.07 kcal Atomic # 8 Polarization: -103.92 SS G_CDS: -5.08 Total: -109.00 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Atomic # 16 Polarization: 103.89 SS G_CDS: -0.29 Total: 103.59 kcal Total: -64.05 1.74 -62.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216358192.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.735 kcal (2) G-P(sol) polarization free energy of solvation -64.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds