Wall clock time and date at job start Mon Mar 30 2020 04:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48492 * 109.47575 * 270.00059 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00536 * 3 2 1 6 6 H 1.48506 * 109.46834 * 150.00253 * 3 2 1 7 7 C 1.39715 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.41225 * 120.00393 * 359.97438 * 7 2 1 10 10 C 1.39342 * 126.42266 * 180.02562 * 9 7 2 11 11 N 1.35880 * 106.13440 * 180.02562 * 10 9 7 12 12 C 1.35110 * 107.71103 * 359.86798 * 11 10 9 13 13 N 1.29414 * 110.45841 * 0.17245 * 12 11 10 14 14 S 1.78343 * 122.75486 * 180.28799 * 12 11 10 15 15 O 1.42098 * 104.79996 * 53.30366 * 14 12 11 16 16 O 1.42099 * 104.80140 * 182.27166 * 14 12 11 17 17 C 1.82665 * 101.35279 * 297.77984 * 14 12 11 18 18 C 1.51442 * 109.07748 * 74.53904 * 17 14 12 19 19 C 1.50003 * 118.11772 * 286.45456 * 18 17 14 20 20 C 1.47759 * 126.19751 * 179.78249 * 11 10 9 21 21 H 0.96995 * 120.00128 * 359.97438 * 1 2 3 22 22 H 1.07998 * 126.93412 * 0.06934 * 10 9 7 23 23 H 1.09001 * 109.53949 * 314.65602 * 17 14 12 24 24 H 1.09006 * 109.59972 * 194.45491 * 17 14 12 25 25 H 1.09006 * 107.71524 * 164.26228 * 18 17 14 26 26 H 1.09001 * 107.71486 * 48.64231 * 18 17 14 27 27 H 1.08996 * 108.94410 * 316.86256 * 19 18 17 28 28 H 1.09002 * 108.94653 * 198.24077 * 19 18 17 29 29 H 1.09003 * 109.77467 * 9.43453 * 20 11 10 30 30 H 1.08991 * 109.77806 * 130.19098 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0465 -1.4000 5 1 1.4416 2.6526 0.7002 6 1 3.5418 1.4401 0.7000 7 6 2.0087 -1.2100 -0.0005 8 1 3.0887 -1.2100 -0.0010 9 6 1.3026 -2.4331 -0.0005 10 6 1.8600 -3.7101 -0.0005 11 7 0.8147 -4.5783 -0.0011 12 6 -0.3238 -3.8509 0.0015 13 7 -0.0521 -2.5856 0.0000 14 16 -1.9445 -4.5952 0.0093 15 8 -1.9275 -5.4903 1.1129 16 8 -2.8475 -3.4994 -0.0442 17 6 -1.9288 -5.5074 -1.5732 18 6 -1.0584 -6.7381 -1.4265 19 6 0.4290 -6.5503 -1.3780 20 6 0.9053 -6.0531 -0.0059 21 1 -0.4850 0.8400 0.0004 22 1 2.9108 -3.9596 0.0005 23 1 -1.5264 -4.8678 -2.3587 24 1 -2.9441 -5.8078 -1.8321 25 1 -1.2816 -7.4035 -2.2606 26 1 -1.3581 -7.2491 -0.5116 27 1 0.7190 -5.8244 -2.1376 28 1 0.9132 -7.5019 -1.5971 29 1 1.9382 -6.3597 0.1592 30 1 0.2689 -6.4643 0.7776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216358259.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:43 Heat of formation + Delta-G solvation = -8.822632 kcal Electronic energy + Delta-G solvation = -17548.989520 eV Core-core repulsion = 14665.790174 eV Total energy + Delta-G solvation = -2883.199346 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38083 -37.02775 -35.92457 -35.47361 -33.38026 -31.94556 -28.91506 -28.79532 -25.51041 -24.17752 -21.55697 -20.47763 -19.92296 -18.14337 -17.47457 -16.36698 -16.26362 -15.24473 -14.91682 -14.55706 -14.37213 -14.31921 -13.73265 -13.22768 -12.80255 -12.53678 -12.15210 -11.74973 -11.64368 -11.57864 -11.33912 -11.09436 -11.01085 -10.88463 -10.85145 -10.28441 -10.18277 -9.88615 -9.23296 -8.32433 -8.25415 -7.38108 -6.23409 -4.09426 0.44960 2.84758 3.16773 3.23989 3.26073 3.29172 3.69801 4.14849 4.21411 4.23900 4.50057 4.61002 4.70157 5.04625 5.08404 5.30702 5.41307 5.63247 5.66684 5.70135 5.78177 5.85721 6.11601 6.20415 6.89773 7.36034 7.51728 7.63087 8.17285 8.51976 8.99030 9.19899 9.67302 10.70770 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.007596 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.114459 B = 3685.175639 C = 4212.395902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.184 3.816 10 C -0.164 4.164 11 N -0.426 5.426 12 C -0.348 4.348 13 N -0.368 5.368 14 S 2.509 3.491 15 O -0.940 6.940 16 O -0.911 6.911 17 C -0.593 4.593 18 C -0.114 4.114 19 C -0.145 4.145 20 C 0.086 3.914 21 H 0.271 0.729 22 H 0.154 0.846 23 H 0.138 0.862 24 H 0.135 0.865 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -12.936 -4.229 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.057 3.943 10 C -0.298 4.298 11 N -0.117 5.117 12 C -0.687 4.687 13 N -0.094 5.094 14 S 2.685 3.315 15 O -0.937 6.937 16 O -0.907 6.907 17 C -0.723 4.723 18 C -0.152 4.152 19 C -0.183 4.183 20 C -0.037 4.037 21 H 0.082 0.918 22 H 0.171 0.829 23 H 0.157 0.843 24 H 0.153 0.847 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.524 -12.273 -3.572 13.029 hybrid contribution 1.826 0.178 -0.633 1.941 sum -0.697 -12.095 -4.205 12.824 Atomic orbital electron populations 1.70080 1.06597 1.27541 1.35067 1.25807 0.94805 1.00346 0.93704 0.86406 0.80156 0.81805 0.78678 1.19940 1.20546 1.19068 1.18440 0.93318 0.88169 1.49311 0.90366 1.18906 0.87276 0.91436 0.96656 1.22935 0.91743 0.90183 1.24949 1.44719 1.06089 1.04711 1.56224 1.35346 1.09476 0.97841 1.26025 1.71186 1.15487 1.09262 1.13436 1.05439 0.73916 0.74960 0.77190 1.93542 1.86470 1.66389 1.47296 1.93602 1.60429 1.50183 1.86495 1.29970 1.08348 1.10838 1.23124 1.20346 0.94358 0.95785 1.04760 1.21622 0.95225 1.03215 0.98216 1.22466 1.04235 0.79083 0.97901 0.91848 0.82905 0.84346 0.84709 0.90057 0.90232 0.90093 0.89351 0.88541 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.94 55.54 0.66 -22.04 16 2 C 0.07 2.02 5.49 -17.35 -0.10 1.93 16 3 Si 0.90 20.29 29.56 -169.99 -5.02 15.26 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.46 -12.96 9.38 -37.90 -0.36 -13.31 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 C 0.18 5.21 6.69 -84.32 -0.56 4.65 16 10 C -0.16 -3.87 11.64 -15.35 -0.18 -4.05 16 11 N -0.43 -8.85 2.70 -114.83 -0.31 -9.16 16 12 C -0.35 -8.21 7.33 -91.21 -0.67 -8.88 16 13 N -0.37 -10.58 9.50 -10.82 -0.10 -10.69 16 14 S 2.51 47.18 5.41 -107.50 -0.58 46.60 16 15 O -0.94 -18.16 15.81 -57.46 -0.91 -19.07 16 16 O -0.91 -20.81 17.96 -57.46 -1.03 -21.84 16 17 C -0.59 -7.41 6.34 36.37 0.23 -7.18 16 18 C -0.11 -1.22 4.90 -29.01 -0.14 -1.36 16 19 C -0.14 -1.65 5.62 -27.95 -0.16 -1.81 16 20 C 0.09 1.25 6.25 -3.08 -0.02 1.23 16 21 H 0.27 7.38 8.30 -40.82 -0.34 7.04 16 22 H 0.15 3.11 8.06 -52.49 -0.42 2.69 16 23 H 0.14 1.73 8.14 -51.93 -0.42 1.31 16 24 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.81 6.97 -51.93 -0.36 0.44 16 27 H 0.08 1.05 8.03 -51.93 -0.42 0.63 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.10 1.38 6.59 -51.93 -0.34 1.03 16 LS Contribution 264.29 15.07 3.98 3.98 Total: -1.00 -37.26 264.29 -8.47 -45.72 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.20 Total: 0.01 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -1.95 Total: -28.78 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.25 Total: -41.89 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.94 Total: -40.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 47.18 SS G_CDS: -0.58 Total: 46.60 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -37.26 -8.47 -45.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216358259.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.899 kcal (2) G-P(sol) polarization free energy of solvation -37.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds