Wall clock time and date at job start Mon Mar 30 2020 04:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48492 * 109.47575 * 270.00059 * 3 2 1 5 5 H 1.48502 * 109.46964 * 30.00536 * 3 2 1 6 6 H 1.48506 * 109.46834 * 150.00253 * 3 2 1 7 7 C 1.39715 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99733 * 179.97438 * 7 2 1 9 9 C 1.41225 * 120.00393 * 359.97438 * 7 2 1 10 10 C 1.39342 * 126.42266 * 180.02562 * 9 7 2 11 11 N 1.35880 * 106.13440 * 180.02562 * 10 9 7 12 12 C 1.35110 * 107.71103 * 359.86798 * 11 10 9 13 13 N 1.29414 * 110.45841 * 0.17245 * 12 11 10 14 14 S 1.78343 * 122.75486 * 180.28799 * 12 11 10 15 15 O 1.42098 * 104.79996 * 53.30366 * 14 12 11 16 16 O 1.42099 * 104.80140 * 182.27166 * 14 12 11 17 17 C 1.82665 * 101.35279 * 297.77984 * 14 12 11 18 18 C 1.51442 * 109.07748 * 74.53904 * 17 14 12 19 19 C 1.50003 * 118.11772 * 286.45456 * 18 17 14 20 20 C 1.47759 * 126.19751 * 179.78249 * 11 10 9 21 21 H 0.96995 * 120.00128 * 359.97438 * 1 2 3 22 22 H 1.07998 * 126.93412 * 0.06934 * 10 9 7 23 23 H 1.09001 * 109.53949 * 314.65602 * 17 14 12 24 24 H 1.09006 * 109.59972 * 194.45491 * 17 14 12 25 25 H 1.09006 * 107.71524 * 164.26228 * 18 17 14 26 26 H 1.09001 * 107.71486 * 48.64231 * 18 17 14 27 27 H 1.08996 * 108.94410 * 316.86256 * 19 18 17 28 28 H 1.09002 * 108.94653 * 198.24077 * 19 18 17 29 29 H 1.09003 * 109.77467 * 9.43453 * 20 11 10 30 30 H 1.08991 * 109.77806 * 130.19098 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0465 -1.4000 5 1 1.4416 2.6526 0.7002 6 1 3.5418 1.4401 0.7000 7 6 2.0087 -1.2100 -0.0005 8 1 3.0887 -1.2100 -0.0010 9 6 1.3026 -2.4331 -0.0005 10 6 1.8600 -3.7101 -0.0005 11 7 0.8147 -4.5783 -0.0011 12 6 -0.3238 -3.8509 0.0015 13 7 -0.0521 -2.5856 0.0000 14 16 -1.9445 -4.5952 0.0093 15 8 -1.9275 -5.4903 1.1129 16 8 -2.8475 -3.4994 -0.0442 17 6 -1.9288 -5.5074 -1.5732 18 6 -1.0584 -6.7381 -1.4265 19 6 0.4290 -6.5503 -1.3780 20 6 0.9053 -6.0531 -0.0059 21 1 -0.4850 0.8400 0.0004 22 1 2.9108 -3.9596 0.0005 23 1 -1.5264 -4.8678 -2.3587 24 1 -2.9441 -5.8078 -1.8321 25 1 -1.2816 -7.4035 -2.2606 26 1 -1.3581 -7.2491 -0.5116 27 1 0.7190 -5.8244 -2.1376 28 1 0.9132 -7.5019 -1.5971 29 1 1.9382 -6.3597 0.1592 30 1 0.2689 -6.4643 0.7776 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216358259.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:43 Heat of formation + Delta-G solvation = -38.444888 kcal Electronic energy + Delta-G solvation = -17550.274038 eV Core-core repulsion = 14665.790174 eV Total energy + Delta-G solvation = -2884.483864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.12770 -38.46656 -37.14790 -37.02351 -35.23481 -33.51297 -30.71830 -30.21048 -27.28363 -25.51913 -22.97050 -21.97507 -21.57053 -19.65160 -19.07469 -18.15898 -17.62013 -16.73961 -16.55653 -16.23750 -15.83197 -15.49673 -14.83924 -14.66079 -14.51914 -14.20693 -13.39553 -13.29168 -13.09627 -13.00107 -12.80985 -12.75381 -12.63451 -12.21070 -12.11508 -11.89031 -11.78275 -11.36758 -11.08858 -10.20496 -10.05621 -9.31446 -8.24131 -6.16662 -0.92820 1.13011 1.40357 1.43603 1.55612 1.67491 2.20051 2.34688 2.38863 2.93544 3.14568 3.58962 3.64962 3.76372 3.87170 4.04119 4.28510 4.39998 4.51175 4.66927 4.81001 4.95182 5.05946 5.07834 5.26689 5.37658 5.65499 5.72933 6.27390 6.65760 7.02150 7.16954 7.80748 8.72498 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.007596 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.114459 B = 3685.175639 C = 4212.395902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.017 3.983 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.493 4.493 8 H 0.085 0.915 9 C 0.126 3.874 10 C -0.151 4.151 11 N -0.413 5.413 12 C -0.364 4.364 13 N -0.435 5.435 14 S 2.494 3.506 15 O -0.955 6.955 16 O -0.967 6.967 17 C -0.544 4.544 18 C -0.128 4.128 19 C -0.141 4.141 20 C 0.068 3.932 21 H 0.269 0.731 22 H 0.184 0.816 23 H 0.144 0.856 24 H 0.186 0.814 25 H 0.133 0.867 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -16.171 -5.908 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.529 4.529 8 H 0.103 0.897 9 C -0.002 4.002 10 C -0.286 4.286 11 N -0.102 5.102 12 C -0.701 4.701 13 N -0.160 5.160 14 S 2.672 3.328 15 O -0.951 6.951 16 O -0.964 6.964 17 C -0.680 4.680 18 C -0.166 4.166 19 C -0.179 4.179 20 C -0.053 4.053 21 H 0.079 0.921 22 H 0.201 0.799 23 H 0.162 0.838 24 H 0.203 0.797 25 H 0.151 0.849 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.734 -15.521 -5.194 16.459 hybrid contribution 1.575 0.817 -0.150 1.781 sum -0.159 -14.704 -5.344 15.646 Atomic orbital electron populations 1.70271 1.08660 1.28236 1.37885 1.26809 0.95606 1.04356 0.92875 0.85173 0.78705 0.76357 0.79058 1.18901 1.20388 1.17855 1.18866 0.93865 0.89433 1.50706 0.89667 1.19476 0.88132 0.93409 0.99169 1.23306 0.93498 0.89516 1.22267 1.45127 1.04509 1.07270 1.53246 1.36313 1.12093 0.97159 1.24528 1.71054 1.16280 1.12588 1.16123 1.06220 0.71756 0.74656 0.80185 1.93498 1.85682 1.65365 1.50565 1.93528 1.61017 1.53500 1.88321 1.29730 1.12343 1.10205 1.15700 1.20615 0.93340 0.95031 1.07589 1.21686 0.96281 1.04900 0.94987 1.23116 1.06589 0.74830 1.00724 0.92091 0.79893 0.83780 0.79701 0.84897 0.88988 0.91533 0.84609 0.85811 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.93 11.94 21.79 0.26 -51.67 16 2 C 0.02 0.99 5.49 85.17 0.47 1.46 16 3 Si 0.99 43.54 29.56 68.60 2.03 45.57 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.49 -29.31 9.38 23.36 0.22 -29.09 16 8 H 0.09 4.66 7.84 -2.91 -0.02 4.63 16 9 C 0.13 7.46 6.69 39.44 0.26 7.73 16 10 C -0.15 -7.12 11.64 84.33 0.98 -6.14 16 11 N -0.41 -16.84 2.70 -517.22 -1.40 -18.24 16 12 C -0.36 -17.57 7.33 180.55 1.32 -16.25 16 13 N -0.43 -26.38 9.50 -188.16 -1.79 -28.17 16 14 S 2.49 93.11 5.41 -56.49 -0.31 92.80 16 15 O -0.95 -36.26 15.81 -127.73 -2.02 -38.28 16 16 O -0.97 -46.15 17.96 -127.73 -2.29 -48.44 16 17 C -0.54 -11.17 6.34 71.47 0.45 -10.71 16 18 C -0.13 -1.92 4.90 29.12 0.14 -1.78 16 19 C -0.14 -2.46 5.62 29.80 0.17 -2.29 16 20 C 0.07 1.73 6.25 86.31 0.54 2.27 16 21 H 0.27 15.74 8.30 -92.71 -0.77 14.97 16 22 H 0.18 7.24 8.06 -2.91 -0.02 7.21 16 23 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 24 H 0.19 2.14 8.14 -2.38 -0.02 2.12 16 25 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.09 1.30 6.97 -2.39 -0.02 1.28 16 27 H 0.07 1.42 8.03 -2.39 -0.02 1.41 16 28 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 2.47 8.10 -2.39 -0.02 2.45 16 30 H 0.10 2.56 6.59 -2.39 -0.02 2.55 16 Total: -1.00 -91.28 264.29 0.20 -91.08 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.16 Total: 10.14 kcal Atomic # 6 Polarization: -59.35 SS G_CDS: 4.56 Total: -54.79 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -2.92 Total: -98.08 kcal Atomic # 8 Polarization: -82.41 SS G_CDS: -4.31 Total: -86.72 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 93.11 SS G_CDS: -0.31 Total: 92.80 kcal Total: -91.28 0.20 -91.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216358259.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.631 kcal (2) G-P(sol) polarization free energy of solvation -91.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds