Wall clock time and date at job start Mon Mar 30 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36036 * 116.99915 * 2 1 4 4 C 1.38492 * 120.06825 * 0.25972 * 3 2 1 5 5 C 1.38278 * 120.03337 * 180.25458 * 4 3 2 6 6 C 1.50693 * 119.91991 * 179.76754 * 5 4 3 7 7 H 1.09003 * 109.47424 * 219.72058 * 6 5 4 8 8 N 1.46897 * 109.47415 * 339.72009 * 6 5 4 9 9 C 1.50701 * 109.47593 * 99.72156 * 6 5 4 10 10 H 1.08005 * 119.99393 * 335.50750 * 9 6 5 11 11 C 1.37873 * 120.00515 * 155.50283 * 9 6 5 12 12 N 1.31524 * 119.99983 * 7.05368 * 11 9 6 13 13 Si 1.86803 * 120.00214 * 187.05545 * 11 9 6 14 14 H 1.48495 * 109.46986 * 269.99741 * 13 11 9 15 15 H 1.48497 * 109.47074 * 30.00289 * 13 11 9 16 16 H 1.48496 * 109.46843 * 149.99923 * 13 11 9 17 17 C 1.38366 * 120.16332 * 359.48935 * 5 4 3 18 18 Cl 1.73599 * 119.93326 * 180.23664 * 17 5 4 19 19 C 1.38315 * 120.13297 * 0.24977 * 17 5 4 20 20 C 1.38724 * 119.97045 * 0.02562 * 19 17 5 21 21 N 1.39959 * 120.08325 * 179.97438 * 20 19 17 22 22 H 1.08997 * 109.46773 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46290 * 299.99558 * 1 2 3 24 24 H 1.08993 * 109.47206 * 59.99480 * 1 2 3 25 25 H 1.08001 * 119.98743 * 359.97438 * 4 3 2 26 26 H 1.00905 * 110.99840 * 66.86964 * 8 6 5 27 27 H 1.00899 * 111.00679 * 190.82432 * 8 6 5 28 28 H 0.96999 * 119.99359 * 355.34582 * 12 11 9 29 29 H 1.08002 * 120.01400 * 179.97438 * 19 17 5 30 30 H 0.97004 * 119.99686 * 359.97438 * 21 20 19 31 31 H 0.96999 * 119.99693 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2937 2.3745 0.0054 5 6 1.9222 3.6062 0.0001 6 6 1.1004 4.8693 0.0007 7 1 1.5621 5.6035 -0.6595 8 7 -0.2575 4.5703 -0.4730 9 6 1.0333 5.4244 1.4002 10 1 1.1682 4.7690 2.2480 11 6 0.8000 6.7687 1.5983 12 7 0.4986 7.5413 0.5774 13 14 0.9119 7.4930 3.3165 14 1 -0.4184 7.4193 3.9723 15 1 1.9005 6.7240 4.1144 16 1 1.3426 8.9114 3.2287 17 6 3.3038 3.6817 0.0000 18 17 4.0866 5.2312 -0.0005 19 6 4.0624 2.5252 0.0000 20 6 3.4377 1.2866 -0.0004 21 7 4.2031 0.1148 -0.0009 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.2151 2.3190 0.0093 26 1 -0.7470 3.9792 0.1820 27 1 -0.7739 5.4189 -0.6499 28 1 0.5066 7.1802 -0.3229 29 1 5.1407 2.5864 -0.0005 30 1 5.1716 0.1682 -0.0014 31 1 3.7649 -0.7506 -0.0009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238416014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:22 Heat of formation + Delta-G solvation = -46.695814 kcal Electronic energy + Delta-G solvation = -17050.975383 eV Core-core repulsion = 14164.090026 eV Total energy + Delta-G solvation = -2886.885357 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20255 -38.79338 -37.12785 -37.03237 -34.87373 -32.99860 -30.81620 -29.66924 -28.37786 -26.94558 -24.38053 -23.17656 -21.95676 -19.23345 -18.60664 -18.22209 -17.70314 -16.66289 -16.51911 -16.05536 -15.71312 -15.36296 -15.11472 -14.85756 -14.29598 -14.03733 -13.91591 -13.56139 -12.91549 -12.69957 -12.65071 -12.27649 -12.03978 -11.93562 -11.86731 -11.50755 -11.28685 -10.90110 -10.61920 -9.36125 -9.29612 -8.57940 -8.03205 -6.30152 0.34733 0.61517 1.45343 1.50365 1.58310 1.75576 2.37586 2.53463 2.83058 3.05985 3.21502 3.92766 4.02241 4.19029 4.43580 4.48948 4.58623 4.63379 4.75209 4.76096 4.92993 5.08532 5.35883 5.63824 5.73788 5.94240 6.15734 6.24237 6.60334 6.62688 6.69721 6.86967 7.09815 7.46932 8.79904 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.007865 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.718735 B = 3559.031662 C = 4193.898684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.325 6.325 3 C 0.047 3.953 4 C -0.148 4.148 5 C -0.069 4.069 6 C 0.233 3.767 7 H 0.029 0.971 8 N -0.842 5.842 9 C -0.606 4.606 10 H 0.032 0.968 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 1.101 2.899 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.285 1.285 17 C -0.038 4.038 18 Cl -0.081 7.081 19 C -0.164 4.164 20 C 0.188 3.812 21 N -0.860 5.860 22 H 0.128 0.872 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.141 0.859 26 H 0.327 0.673 27 H 0.326 0.674 28 H 0.260 0.740 29 H 0.153 0.847 30 H 0.408 0.592 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -14.855 -0.681 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.239 6.239 3 C -0.001 4.001 4 C -0.167 4.167 5 C -0.073 4.073 6 C 0.123 3.877 7 H 0.047 0.953 8 N -0.368 5.368 9 C -0.646 4.646 10 H 0.050 0.950 11 C -0.211 4.211 12 N -0.567 5.567 13 Si 0.925 3.075 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.211 1.211 17 C -0.066 4.066 18 Cl -0.052 7.052 19 C -0.188 4.188 20 C 0.083 3.917 21 N -0.404 5.404 22 H 0.146 0.854 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.158 0.842 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.238 0.762 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.344 -13.856 -0.463 14.529 hybrid contribution -0.113 -0.436 -0.076 0.457 sum 4.231 -14.293 -0.539 14.916 Atomic orbital electron populations 1.23233 0.77004 1.05296 1.01549 1.85888 1.22772 1.25397 1.89845 1.18530 0.90797 0.85044 1.05760 1.20842 1.00575 0.90185 1.05138 1.19683 0.92128 0.96026 0.99449 1.17879 0.86757 0.89460 0.93578 0.95290 1.59525 1.05192 1.21337 1.50743 1.22523 1.53647 0.95670 0.92764 0.94987 1.26825 0.92325 0.94491 1.07456 1.70909 1.45456 1.40228 1.00059 0.83119 0.77406 0.75396 0.71553 1.19975 1.20523 1.21101 1.20483 0.92221 0.86371 1.07502 1.98319 1.80328 1.29569 1.96962 1.20274 1.00273 0.88370 1.09878 1.16793 0.87370 0.88092 0.99433 1.42046 1.08363 1.04249 1.85693 0.85407 0.93023 0.92723 0.84153 0.86232 0.86311 0.92890 0.82961 0.76156 0.76238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.32 -8.98 9.74 -93.96 -0.92 -9.90 16 3 C 0.05 1.57 6.70 22.59 0.15 1.72 16 4 C -0.15 -5.65 8.26 22.34 0.18 -5.46 16 5 C -0.07 -3.07 5.07 -19.83 -0.10 -3.17 16 6 C 0.23 11.55 2.01 43.42 0.09 11.64 16 7 H 0.03 1.62 6.24 -2.39 -0.01 1.60 16 8 N -0.84 -37.70 8.52 -174.96 -1.49 -39.19 16 9 C -0.61 -32.76 8.28 25.60 0.21 -32.55 16 10 H 0.03 1.79 7.81 -2.91 -0.02 1.77 16 11 C -0.01 -0.56 5.45 84.65 0.46 -0.10 16 12 N -0.93 -54.25 13.63 21.45 0.29 -53.96 16 13 Si 1.10 50.36 29.91 68.60 2.05 52.42 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 C -0.04 -1.57 6.30 22.32 0.14 -1.43 16 18 Cl -0.08 -3.43 27.29 -2.72 -0.07 -3.50 16 19 C -0.16 -5.50 9.67 22.40 0.22 -5.28 16 20 C 0.19 5.78 6.77 38.22 0.26 6.04 16 21 N -0.86 -18.55 9.09 -51.06 -0.46 -19.02 16 22 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.14 7.65 -2.39 -0.02 1.13 16 24 H 0.05 1.20 7.67 -2.39 -0.02 1.18 16 25 H 0.14 5.06 4.66 -2.91 -0.01 5.05 16 26 H 0.33 13.71 7.62 -89.69 -0.68 13.03 16 27 H 0.33 15.26 8.44 -89.69 -0.76 14.51 16 28 H 0.26 15.34 6.22 -92.71 -0.58 14.76 16 29 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 30 H 0.41 6.65 8.85 -92.71 -0.82 5.83 16 31 H 0.41 7.80 8.19 -92.71 -0.76 7.04 16 Total: -1.00 -63.78 277.39 0.52 -63.26 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -1.61 Total: 36.86 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.72 Total: -26.98 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -1.66 Total: -112.16 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.92 Total: -9.90 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.42 kcal Atomic # 17 Polarization: -3.43 SS G_CDS: -0.07 Total: -3.50 kcal Total: -63.78 0.52 -63.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238416014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.567 kcal (2) G-P(sol) polarization free energy of solvation -63.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds