Wall clock time and date at job start Mon Mar 30 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48508 * 109.46879 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47001 * 299.99729 * 3 2 1 6 6 H 1.48495 * 109.47167 * 60.00052 * 3 2 1 7 7 C 1.37871 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00091 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47380 * 299.99949 * 9 7 2 11 11 N 1.46906 * 109.46726 * 59.99826 * 9 7 2 12 12 C 1.50703 * 109.47526 * 179.97438 * 9 7 2 13 13 C 1.38562 * 120.45960 * 258.67684 * 12 9 7 14 14 C 1.38731 * 118.47791 * 179.97438 * 13 12 9 15 15 Cl 1.73598 * 120.33491 * 179.97438 * 14 13 12 16 16 C 1.38785 * 119.32816 * 359.97438 * 14 13 12 17 17 N 1.31440 * 120.88724 * 0.02562 * 16 14 13 18 18 C 1.32808 * 121.64479 * 359.72152 * 17 16 14 19 19 C 1.48006 * 119.70443 * 180.27061 * 18 17 16 20 20 O 1.21440 * 119.99710 * 185.06745 * 19 18 17 21 21 O 1.34681 * 120.00223 * 5.06605 * 19 18 17 22 22 H 0.97004 * 120.00116 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99615 * 60.00387 * 11 9 7 24 24 H 1.00907 * 110.99227 * 183.95307 * 11 9 7 25 25 H 1.08000 * 120.76414 * 359.97438 * 13 12 9 26 26 H 1.08000 * 119.55828 * 179.97438 * 16 14 13 27 27 H 0.96703 * 117.00017 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4059 -2.5777 -1.1974 12 6 2.2302 -3.6446 0.0015 13 6 2.5075 -4.3315 -1.1696 14 6 3.4160 -5.3788 -1.1229 15 17 3.7985 -6.2725 -2.5612 16 6 4.0160 -5.7049 0.0853 17 7 3.7340 -5.0359 1.1810 18 6 2.8739 -4.0239 1.1776 19 6 2.5926 -3.2963 2.4354 20 8 1.7403 -2.4315 2.4589 21 8 3.2817 -3.5932 3.5538 22 1 -0.4850 0.8401 0.0004 23 1 0.9637 -2.5268 -2.0367 24 1 -0.1580 -3.4144 -1.1881 25 1 2.0274 -4.0577 -2.0975 26 1 4.7235 -6.5199 0.1260 27 1 3.0624 -3.0915 4.3508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238588181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:37 Heat of formation + Delta-G solvation = -44.625455 kcal Electronic energy + Delta-G solvation = -16836.371506 eV Core-core repulsion = 13813.742832 eV Total energy + Delta-G solvation = -3022.628674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.53478 -38.90865 -36.65281 -35.86494 -34.83918 -32.19619 -31.42002 -30.06953 -26.32740 -24.86038 -23.82688 -21.34556 -20.59690 -17.97609 -17.02987 -16.62896 -16.36678 -15.88406 -15.11794 -14.65829 -14.30025 -13.93963 -13.78956 -13.36994 -12.81380 -12.40606 -12.26151 -11.98991 -11.59177 -11.26925 -10.95833 -10.84634 -10.80323 -10.24136 -9.80806 -9.50593 -9.46826 -9.10397 -8.54166 -8.33537 -7.29625 -5.89002 -4.02082 0.69082 1.41781 1.99136 2.87696 3.32220 3.35125 3.40118 3.42887 4.02032 4.47400 4.51504 4.81814 5.06168 5.21505 5.35516 5.59396 5.90917 6.04418 6.10914 6.35772 6.66546 6.91652 7.45402 7.81227 7.84126 8.12808 8.45129 8.53796 8.84682 9.05791 9.63772 11.16135 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.008276 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.457664 B = 3382.419190 C = 4191.357943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.091 3.909 3 Si 0.884 3.116 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.048 0.952 9 C 0.246 3.754 10 H 0.094 0.906 11 N -0.810 5.810 12 C -0.046 4.046 13 C -0.092 4.092 14 C -0.057 4.057 15 Cl -0.061 7.061 16 C 0.078 3.922 17 N -0.422 5.422 18 C 0.085 3.915 19 C 0.521 3.479 20 O -0.441 6.441 21 O -0.510 6.510 22 H 0.255 0.745 23 H 0.316 0.684 24 H 0.300 0.700 25 H 0.149 0.851 26 H 0.165 0.835 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -10.647 -0.361 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.117 4.117 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.066 0.934 9 C 0.136 3.864 10 H 0.111 0.889 11 N -0.337 5.337 12 C -0.051 4.051 13 C -0.119 4.119 14 C -0.086 4.086 15 Cl -0.032 7.032 16 C -0.084 4.084 17 N -0.133 5.133 18 C -0.051 4.051 19 C 0.360 3.640 20 O -0.323 6.323 21 O -0.321 6.321 22 H 0.065 0.935 23 H 0.130 0.870 24 H 0.111 0.889 25 H 0.167 0.833 26 H 0.182 0.818 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.387 -10.073 0.239 11.426 hybrid contribution 0.714 0.451 -0.736 1.120 sum 6.101 -9.622 -0.496 11.404 Atomic orbital electron populations 1.70092 1.05587 1.25570 1.46182 1.24812 0.94612 0.98262 0.93973 0.86702 0.80153 0.84438 0.77564 1.20038 1.20990 1.20976 1.20477 0.91509 0.88690 1.54675 0.93423 1.18857 0.87768 0.87522 0.92215 0.88882 1.59213 1.27977 1.42158 1.04322 1.23096 0.95845 0.96200 0.89958 1.21431 0.97002 0.93649 0.99809 1.22412 1.00119 0.96607 0.89459 1.98364 1.93320 1.74118 1.37432 1.22590 0.99852 1.00007 0.85981 1.67698 1.11772 1.04920 1.28883 1.19934 0.97769 0.95369 0.92055 1.20279 0.79634 0.81090 0.82951 1.91089 1.29686 1.27655 1.83916 1.84633 1.62866 1.64032 1.20588 0.93467 0.87036 0.88929 0.83320 0.81815 0.73722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.14 12.77 55.43 0.71 -23.43 15 2 C 0.09 2.51 5.39 -17.82 -0.10 2.41 15 3 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 7 C -0.51 -13.79 7.42 -34.44 -0.26 -14.04 15 8 H 0.05 1.31 7.74 -52.49 -0.41 0.90 15 9 C 0.25 5.86 2.14 -70.01 -0.15 5.71 15 10 H 0.09 2.51 5.90 -51.93 -0.31 2.20 15 11 N -0.81 -17.86 8.00 -6.64 -0.05 -17.91 15 12 C -0.05 -0.92 5.07 -104.09 -0.53 -1.45 15 13 C -0.09 -1.57 9.14 -39.28 -0.36 -1.92 15 14 C -0.06 -0.85 6.35 -39.20 -0.25 -1.10 15 15 Cl -0.06 -0.75 28.99 -51.86 -1.50 -2.26 15 16 C 0.08 1.17 10.99 -17.52 -0.19 0.97 15 17 N -0.42 -7.51 10.12 -9.78 -0.10 -7.61 15 18 C 0.08 1.68 6.74 -83.03 -0.56 1.12 15 19 C 0.52 10.39 8.21 34.74 0.29 10.68 15 20 O -0.44 -10.21 13.16 -19.22 -0.25 -10.46 15 21 O -0.51 -8.16 13.25 -40.44 -0.54 -8.70 15 22 H 0.26 7.03 8.31 -40.82 -0.34 6.70 15 23 H 0.32 6.51 7.37 -39.29 -0.29 6.22 15 24 H 0.30 5.81 9.05 -39.29 -0.36 5.46 15 25 H 0.15 2.32 6.37 -52.49 -0.33 1.98 15 26 H 0.16 1.89 8.06 -52.49 -0.42 1.47 15 27 H 0.41 4.40 9.11 45.56 0.42 4.81 15 LS Contribution 260.49 15.07 3.93 3.93 Total: -1.00 -31.29 260.49 -5.77 -37.06 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -0.83 Total: 10.65 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.10 Total: 2.38 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.56 Total: -48.95 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.79 Total: -19.16 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.29 -5.77 -37.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.564 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds