Wall clock time and date at job start Mon Mar 30 2020 03:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48508 * 109.46879 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47001 * 299.99729 * 3 2 1 6 6 H 1.48495 * 109.47167 * 60.00052 * 3 2 1 7 7 C 1.37871 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00091 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47380 * 299.99949 * 9 7 2 11 11 N 1.46906 * 109.46726 * 59.99826 * 9 7 2 12 12 C 1.50703 * 109.47526 * 179.97438 * 9 7 2 13 13 C 1.38562 * 120.45960 * 258.67684 * 12 9 7 14 14 C 1.38731 * 118.47791 * 179.97438 * 13 12 9 15 15 Cl 1.73598 * 120.33491 * 179.97438 * 14 13 12 16 16 C 1.38785 * 119.32816 * 359.97438 * 14 13 12 17 17 N 1.31440 * 120.88724 * 0.02562 * 16 14 13 18 18 C 1.32808 * 121.64479 * 359.72152 * 17 16 14 19 19 C 1.48006 * 119.70443 * 180.27061 * 18 17 16 20 20 O 1.21440 * 119.99710 * 185.06745 * 19 18 17 21 21 O 1.34681 * 120.00223 * 5.06605 * 19 18 17 22 22 H 0.97004 * 120.00116 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99615 * 60.00387 * 11 9 7 24 24 H 1.00907 * 110.99227 * 183.95307 * 11 9 7 25 25 H 1.08000 * 120.76414 * 359.97438 * 13 12 9 26 26 H 1.08000 * 119.55828 * 179.97438 * 16 14 13 27 27 H 0.96703 * 117.00017 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4059 -2.5777 -1.1974 12 6 2.2302 -3.6446 0.0015 13 6 2.5075 -4.3315 -1.1696 14 6 3.4160 -5.3788 -1.1229 15 17 3.7985 -6.2725 -2.5612 16 6 4.0160 -5.7049 0.0853 17 7 3.7340 -5.0359 1.1810 18 6 2.8739 -4.0239 1.1776 19 6 2.5926 -3.2963 2.4354 20 8 1.7403 -2.4315 2.4589 21 8 3.2817 -3.5932 3.5538 22 1 -0.4850 0.8401 0.0004 23 1 0.9637 -2.5268 -2.0367 24 1 -0.1580 -3.4144 -1.1881 25 1 2.0274 -4.0577 -2.0975 26 1 4.7235 -6.5199 0.1260 27 1 3.0624 -3.0915 4.3508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238588181.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:37 Heat of formation + Delta-G solvation = -69.009138 kcal Electronic energy + Delta-G solvation = -16837.428862 eV Core-core repulsion = 13813.742832 eV Total energy + Delta-G solvation = -3023.686030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.96280 -40.35277 -37.81132 -37.38404 -36.46544 -34.01443 -32.88872 -31.64601 -28.21123 -26.29916 -25.44466 -22.78456 -22.25066 -19.38818 -18.64469 -18.39934 -17.76592 -17.25510 -16.67054 -16.51161 -16.01148 -15.44605 -15.13377 -14.85068 -14.30658 -14.20903 -13.69522 -13.45226 -13.11580 -12.80621 -12.69284 -12.39787 -12.36562 -12.12325 -11.56727 -11.15877 -10.87930 -10.64724 -10.42730 -9.95031 -9.00684 -7.95395 -6.12547 -0.69276 0.06429 0.80579 1.39430 1.42276 1.43001 1.50942 1.99405 2.45066 2.64299 3.21467 3.30917 3.58268 3.69331 3.84790 4.17140 4.46834 4.56483 4.66185 4.91995 5.27213 5.46042 5.70338 5.75287 6.18667 6.49281 6.63622 7.04803 7.16219 7.22786 7.55779 9.09437 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.008276 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.457664 B = 3382.419190 C = 4191.357943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.034 0.966 9 C 0.255 3.745 10 H 0.055 0.945 11 N -0.820 5.820 12 C -0.068 4.068 13 C -0.089 4.089 14 C -0.047 4.047 15 Cl -0.027 7.027 16 C 0.092 3.908 17 N -0.430 5.430 18 C 0.065 3.935 19 C 0.524 3.476 20 O -0.486 6.486 21 O -0.499 6.499 22 H 0.253 0.747 23 H 0.325 0.675 24 H 0.315 0.685 25 H 0.160 0.840 26 H 0.206 0.794 27 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -12.240 -1.276 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.160 4.160 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.052 0.948 9 C 0.145 3.855 10 H 0.073 0.927 11 N -0.349 5.349 12 C -0.073 4.073 13 C -0.116 4.116 14 C -0.076 4.076 15 Cl 0.002 6.998 16 C -0.071 4.071 17 N -0.141 5.141 18 C -0.070 4.070 19 C 0.365 3.635 20 O -0.371 6.371 21 O -0.312 6.312 22 H 0.062 0.938 23 H 0.139 0.861 24 H 0.127 0.873 25 H 0.178 0.822 26 H 0.222 0.778 27 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.125 -11.677 -0.654 13.695 hybrid contribution 0.302 0.728 -0.487 0.926 sum 7.427 -10.949 -1.141 13.279 Atomic orbital electron populations 1.70206 1.06746 1.25951 1.48070 1.25464 0.95314 1.01123 0.94142 0.85848 0.78979 0.81183 0.77511 1.19896 1.20324 1.21118 1.20675 0.90949 0.90473 1.53434 0.94804 1.18279 0.87962 0.87975 0.91280 0.92738 1.58964 1.28369 1.43425 1.04147 1.22681 0.96498 0.96454 0.91684 1.21511 0.97251 0.93769 0.99024 1.22424 0.98645 0.95691 0.90817 1.98387 1.92885 1.73021 1.35491 1.23314 0.99071 0.99636 0.85079 1.67751 1.11524 1.04656 1.30195 1.19939 0.98792 0.96453 0.91833 1.20491 0.78882 0.80303 0.83847 1.91082 1.31623 1.29683 1.84733 1.84580 1.61801 1.64038 1.20767 0.93752 0.86111 0.87267 0.82230 0.77755 0.71228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.43 12.77 21.44 0.27 -51.16 15 2 C 0.04 2.43 5.39 84.65 0.46 2.89 15 3 Si 0.94 44.57 29.54 68.60 2.03 46.59 15 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 15 7 C -0.52 -28.24 7.42 25.60 0.19 -28.05 15 8 H 0.03 1.89 7.74 -2.91 -0.02 1.87 15 9 C 0.26 12.44 2.14 43.42 0.09 12.54 15 10 H 0.06 3.10 5.90 -2.39 -0.01 3.08 15 11 N -0.82 -36.55 8.00 -174.93 -1.40 -37.95 15 12 C -0.07 -2.73 5.07 -19.52 -0.10 -2.83 15 13 C -0.09 -2.87 9.14 22.47 0.21 -2.66 15 14 C -0.05 -1.24 6.35 22.52 0.14 -1.10 15 15 Cl -0.03 -0.56 28.99 -2.72 -0.08 -0.64 15 16 C 0.09 2.42 10.99 84.88 0.93 3.35 15 17 N -0.43 -14.43 10.12 -184.86 -1.87 -16.30 15 18 C 0.06 2.53 6.74 41.85 0.28 2.82 15 19 C 0.52 21.18 8.21 70.41 0.58 21.76 15 20 O -0.49 -23.39 13.16 20.03 0.26 -23.13 15 21 O -0.50 -15.64 13.25 -55.91 -0.74 -16.38 15 22 H 0.25 14.30 8.31 -92.70 -0.77 13.53 15 23 H 0.32 13.28 7.37 -89.69 -0.66 12.62 15 24 H 0.32 12.27 9.05 -89.69 -0.81 11.45 15 25 H 0.16 4.68 6.37 -2.91 -0.02 4.66 15 26 H 0.21 3.67 8.06 -2.91 -0.02 3.64 15 27 H 0.43 8.95 9.11 -74.06 -0.67 8.28 15 Total: -1.00 -68.42 260.49 0.38 -68.04 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.88 Total: 22.20 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 2.78 Total: 8.72 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.00 Total: -105.41 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -0.48 Total: -39.51 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -68.42 0.38 -68.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588181.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.965 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds