Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99823 * 2 1 4 4 H 1.48507 * 109.47124 * 270.00125 * 3 2 1 5 5 H 1.48502 * 109.47035 * 30.00191 * 3 2 1 6 6 H 1.48502 * 109.47304 * 150.00400 * 3 2 1 7 7 C 1.37875 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00395 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99811 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47440 * 300.00382 * 9 7 2 11 11 N 1.46905 * 109.46979 * 60.00162 * 9 7 2 12 12 C 1.50695 * 109.47423 * 179.97438 * 9 7 2 13 13 C 1.38366 * 119.43914 * 124.97695 * 12 9 7 14 14 C 1.38341 * 119.34482 * 179.74770 * 13 12 9 15 15 C 1.40065 * 118.29712 * 0.52020 * 14 13 12 16 16 C 1.47643 * 120.57443 * 179.78186 * 15 14 13 17 17 O 1.21477 * 120.00426 * 179.71838 * 16 15 14 18 18 O 1.34720 * 119.99791 * 359.71829 * 16 15 14 19 19 C 1.39766 * 118.85659 * 359.50356 * 15 14 13 20 20 Cl 1.73598 * 119.74327 * 180.25357 * 19 15 14 21 21 N 1.31815 * 120.51360 * 0.23191 * 19 15 14 22 22 H 0.96996 * 120.00012 * 359.97438 * 1 2 3 23 23 H 1.00899 * 111.00058 * 59.99924 * 11 9 7 24 24 H 1.00898 * 111.00007 * 183.95500 * 11 9 7 25 25 H 1.07997 * 120.32562 * 0.02571 * 13 12 9 26 26 H 1.07994 * 120.85007 * 180.29561 * 14 13 12 27 27 H 0.96700 * 117.00126 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 7 0.4062 -2.5767 -1.1997 12 6 2.2305 -3.6445 -0.0018 13 6 2.1481 -4.6108 0.9852 14 6 3.0448 -5.6642 0.9791 15 6 4.0157 -5.7039 -0.0296 16 6 5.0006 -6.8026 -0.0811 17 8 5.8350 -6.8296 -0.9636 18 8 4.9739 -7.7754 0.8505 19 6 4.0325 -4.6887 -0.9901 20 17 5.2217 -4.7188 -2.2544 21 7 3.1521 -3.7088 -0.9436 22 1 -0.4850 0.8400 0.0004 23 1 0.9639 -2.5251 -2.0390 24 1 -0.1577 -3.4133 -1.1912 25 1 1.3885 -4.5455 1.7501 26 1 2.9996 -6.4343 1.7349 27 1 5.6390 -8.4733 0.7757 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591345.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = -75.443969 kcal Electronic energy + Delta-G solvation = -16329.957372 eV Core-core repulsion = 13305.992307 eV Total energy + Delta-G solvation = -3023.965065 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.81787 -40.56928 -37.81314 -37.00896 -36.40806 -33.94240 -33.45158 -31.69455 -28.26156 -26.23223 -25.05617 -23.10540 -22.31949 -19.25931 -18.59572 -18.45757 -17.73393 -17.22218 -16.80173 -16.36487 -15.94498 -15.49089 -15.37913 -14.84527 -14.36331 -14.24430 -13.61893 -13.28743 -12.87974 -12.75545 -12.60471 -12.55437 -12.53237 -11.97355 -11.44751 -11.25913 -11.02143 -10.66693 -10.51997 -10.04657 -8.98341 -7.99545 -6.17055 -0.67113 0.05878 0.69133 1.42741 1.43637 1.47230 1.54026 1.90236 2.45543 2.60518 3.25374 3.36557 3.59755 3.82980 3.92192 4.27646 4.42010 4.54044 4.76473 4.93043 5.31301 5.38508 5.53253 5.77327 6.08389 6.58998 6.73103 6.95291 7.01733 7.22947 7.53155 9.04335 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.006125 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.241644 B = 4570.515716 C = 4983.203755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.283 1.283 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.266 3.734 10 H 0.051 0.949 11 N -0.811 5.811 12 C 0.158 3.842 13 C -0.181 4.181 14 C 0.011 3.989 15 C -0.198 4.198 16 C 0.539 3.461 17 O -0.522 6.522 18 O -0.496 6.496 19 C 0.211 3.789 20 Cl -0.013 7.013 21 N -0.495 5.495 22 H 0.257 0.743 23 H 0.325 0.675 24 H 0.314 0.686 25 H 0.174 0.826 26 H 0.196 0.804 27 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 -15.379 3.611 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.058 0.942 9 C 0.155 3.845 10 H 0.068 0.932 11 N -0.337 5.337 12 C 0.020 3.980 13 C -0.201 4.201 14 C -0.014 4.014 15 C -0.203 4.203 16 C 0.383 3.617 17 O -0.412 6.412 18 O -0.311 6.311 19 C 0.044 3.956 20 Cl 0.015 6.985 21 N -0.206 5.206 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.125 0.875 25 H 0.191 0.809 26 H 0.213 0.787 27 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 5.787 -13.635 2.935 15.100 hybrid contribution 1.510 -0.684 -0.148 1.664 sum 7.297 -14.319 2.786 16.311 Atomic orbital electron populations 1.70169 1.06572 1.26454 1.47844 1.25508 0.95397 1.01257 0.94087 0.85848 0.78829 0.80670 0.77826 1.20963 1.20483 1.20038 1.20967 0.91822 0.90888 1.53670 0.94214 1.18161 0.86717 0.88105 0.91480 0.93169 1.59085 1.27730 1.42661 1.04174 1.23542 0.91119 0.95862 0.87501 1.22494 1.02369 0.94577 1.00694 1.22252 0.88263 0.96623 0.94219 1.19749 1.02244 0.97327 1.00959 1.20164 0.81761 0.81058 0.78729 1.90965 1.37801 1.76386 1.36052 1.84465 1.59489 1.36291 1.50834 1.22103 0.92053 0.90968 0.90456 1.98415 1.52444 1.97545 1.50058 1.67016 1.04111 1.22367 1.27125 0.93403 0.86290 0.87487 0.80880 0.78655 0.70045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.39 12.77 21.45 0.27 -49.12 15 2 C 0.04 2.28 5.39 84.65 0.46 2.73 15 3 Si 0.94 43.96 29.54 68.60 2.03 45.99 15 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 7 C -0.53 -28.84 8.52 25.60 0.22 -28.62 15 8 H 0.04 2.24 7.68 -2.91 -0.02 2.21 15 9 C 0.27 12.36 2.93 43.42 0.13 12.49 15 10 H 0.05 2.42 7.86 -2.39 -0.02 2.40 15 11 N -0.81 -36.86 8.53 -174.95 -1.49 -38.35 15 12 C 0.16 6.19 5.68 42.57 0.24 6.43 15 13 C -0.18 -5.24 9.69 22.32 0.22 -5.02 15 14 C 0.01 0.27 9.74 22.74 0.22 0.49 15 15 C -0.20 -5.70 5.89 -19.98 -0.12 -5.82 15 16 C 0.54 13.36 8.27 70.31 0.58 13.94 15 17 O -0.52 -15.64 14.79 19.91 0.29 -15.34 15 18 O -0.50 -7.46 12.76 -56.30 -0.72 -8.18 15 19 C 0.21 7.59 7.32 85.07 0.62 8.21 15 20 Cl -0.01 -0.47 26.20 -2.72 -0.07 -0.54 15 21 N -0.49 -20.29 9.84 -173.72 -1.71 -22.00 15 22 H 0.26 13.93 8.31 -92.71 -0.77 13.16 15 23 H 0.33 15.14 8.91 -89.69 -0.80 14.34 15 24 H 0.31 12.27 9.06 -89.70 -0.81 11.45 15 25 H 0.17 4.06 7.94 -2.91 -0.02 4.04 15 26 H 0.20 2.86 7.70 -2.91 -0.02 2.83 15 27 H 0.44 2.33 9.11 -74.06 -0.67 1.66 15 Total: -1.00 -67.25 265.73 0.15 -67.10 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -1.02 Total: 15.60 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 2.57 Total: 4.83 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -2.93 Total: -109.47 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.42 Total: -23.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -67.25 0.15 -67.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591345.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.340 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds