Wall clock time and date at job start Mon Mar 30 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38568 * 120.45752 * 99.71723 * 12 9 7 14 14 C 1.38731 * 118.47416 * 179.78299 * 13 12 9 15 15 Cl 1.73606 * 120.33277 * 180.24239 * 14 13 12 16 16 C 1.38788 * 119.33260 * 0.49896 * 14 13 12 17 17 N 1.31445 * 120.88121 * 359.74245 * 16 14 13 18 18 C 1.32797 * 121.65225 * 0.02562 * 17 16 14 19 19 C 1.47996 * 119.71048 * 179.97438 * 18 17 16 20 20 O 1.21442 * 120.00089 * 180.02562 * 19 18 17 21 21 O 1.34690 * 120.00189 * 0.02562 * 19 18 17 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 24 24 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 25 25 H 1.07998 * 120.76307 * 0.02562 * 13 12 9 26 26 H 1.08003 * 119.56065 * 179.72469 * 16 14 13 27 27 H 0.96699 * 117.00220 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5337 -4.3094 1.1779 14 6 3.4374 -5.3609 1.1298 15 17 3.8473 -6.2314 2.5748 16 6 4.0144 -5.7064 -0.0842 17 7 3.7118 -5.0547 -1.1849 18 6 2.8484 -4.0457 -1.1823 19 6 2.5395 -3.3414 -2.4467 20 8 1.7511 -2.4177 -2.4502 21 8 3.1327 -3.7248 -3.5935 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.1578 -3.4134 1.1912 24 1 0.9638 -2.5251 2.0390 25 1 2.0740 -4.0183 2.1108 26 1 4.7218 -6.5215 -0.1251 27 1 2.8996 -3.2344 -4.3937 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238615718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:38 Heat of formation + Delta-G solvation = -50.226154 kcal Electronic energy + Delta-G solvation = -16878.281236 eV Core-core repulsion = 13855.409697 eV Total energy + Delta-G solvation = -3022.871539 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.62429 -38.98479 -36.72135 -36.02086 -35.05026 -32.26001 -31.41258 -30.12620 -26.09857 -24.91429 -23.62164 -21.42150 -20.83313 -18.05511 -17.19620 -16.89692 -16.52389 -15.92868 -15.27907 -14.67500 -14.24856 -13.89641 -13.71483 -13.56426 -13.02487 -12.55841 -12.19661 -12.06679 -11.70747 -11.32704 -11.00601 -10.83230 -10.67325 -10.09662 -9.72118 -9.70281 -9.47756 -9.01964 -8.41226 -8.22690 -7.70143 -6.18799 -3.98745 0.61144 1.33511 1.92543 2.79619 3.27865 3.46967 3.51101 3.65877 3.94020 4.43172 4.60662 4.74114 4.97128 5.13016 5.35976 5.57369 5.81117 5.93080 5.96190 6.23015 6.56259 6.81958 7.19248 7.74286 7.89425 8.14349 8.41192 8.57985 8.60922 9.03018 9.81621 11.22861 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.008336 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.860789 B = 3358.110667 C = 4175.166373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.045 3.955 3 Si 1.066 2.934 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.588 4.588 8 H 0.040 0.960 9 C 0.232 3.768 10 H 0.083 0.917 11 N -0.830 5.830 12 C -0.040 4.040 13 C -0.091 4.091 14 C -0.056 4.056 15 Cl -0.059 7.059 16 C 0.079 3.921 17 N -0.421 5.421 18 C 0.085 3.915 19 C 0.520 3.480 20 O -0.442 6.442 21 O -0.509 6.509 22 H 0.290 0.710 23 H 0.303 0.697 24 H 0.325 0.675 25 H 0.149 0.851 26 H 0.166 0.834 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.064 -11.169 0.373 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.165 4.165 3 Si 0.895 3.105 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.210 1.210 7 C -0.627 4.627 8 H 0.059 0.941 9 C 0.122 3.878 10 H 0.101 0.899 11 N -0.359 5.359 12 C -0.045 4.045 13 C -0.118 4.118 14 C -0.085 4.085 15 Cl -0.030 7.030 16 C -0.083 4.083 17 N -0.131 5.131 18 C -0.051 4.051 19 C 0.359 3.641 20 O -0.325 6.325 21 O -0.320 6.320 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.139 0.861 25 H 0.166 0.834 26 H 0.183 0.817 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.759 -9.063 -0.233 10.741 hybrid contribution 0.527 -2.180 0.747 2.364 sum 6.286 -11.243 0.514 12.891 Atomic orbital electron populations 1.70500 1.06776 1.32787 1.41853 1.25496 0.96561 1.01454 0.92991 0.83619 0.74709 0.75672 0.76508 1.21633 1.21893 1.21011 1.21336 0.92656 0.89587 1.59110 0.94148 1.18961 0.88319 0.89170 0.91312 0.89949 1.59495 1.28562 1.42473 1.05377 1.22769 0.95986 0.95658 0.90131 1.21395 0.96976 0.93724 0.99695 1.22405 1.00017 0.96703 0.89420 1.98368 1.92629 1.75268 1.36754 1.22620 0.99837 0.99996 0.85829 1.67703 1.11200 1.05158 1.29071 1.19919 0.97889 0.95430 0.91843 1.20276 0.79116 0.81554 0.83136 1.91089 1.30994 1.25100 1.85282 1.84633 1.67206 1.61696 1.18480 0.89716 0.88565 0.86135 0.83375 0.81682 0.73651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.50 55.43 0.75 -25.65 15 2 C 0.05 1.28 5.39 -17.82 -0.10 1.19 15 3 Si 1.07 25.46 29.90 -169.99 -5.08 20.38 15 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.59 -15.96 7.41 -34.44 -0.26 -16.22 15 8 H 0.04 1.13 7.74 -52.49 -0.41 0.73 15 9 C 0.23 5.48 1.75 -70.01 -0.12 5.35 15 10 H 0.08 2.18 5.79 -51.93 -0.30 1.88 15 11 N -0.83 -17.88 7.30 -6.65 -0.05 -17.93 15 12 C -0.04 -0.82 5.06 -104.09 -0.53 -1.34 15 13 C -0.09 -1.55 9.16 -39.28 -0.36 -1.91 15 14 C -0.06 -0.84 6.36 -39.20 -0.25 -1.09 15 15 Cl -0.06 -0.72 28.99 -51.86 -1.50 -2.23 15 16 C 0.08 1.19 10.99 -17.51 -0.19 0.99 15 17 N -0.42 -7.49 10.12 -9.78 -0.10 -7.59 15 18 C 0.09 1.70 6.74 -83.04 -0.56 1.14 15 19 C 0.52 10.41 8.26 34.73 0.29 10.70 15 20 O -0.44 -10.31 13.09 -19.22 -0.25 -10.56 15 21 O -0.51 -8.14 13.24 -40.47 -0.54 -8.68 15 22 H 0.29 8.64 6.39 -40.82 -0.26 8.38 15 23 H 0.30 5.65 9.06 -39.29 -0.36 5.30 15 24 H 0.32 6.61 7.34 -39.29 -0.29 6.32 15 25 H 0.15 2.32 6.38 -52.49 -0.33 1.98 15 26 H 0.17 1.89 8.06 -52.48 -0.42 1.47 15 27 H 0.41 4.40 9.11 45.56 0.42 4.81 15 LS Contribution 258.44 15.07 3.89 3.89 Total: -1.00 -32.02 258.44 -5.70 -37.72 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -0.75 Total: 11.83 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.07 Total: -1.19 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.60 Total: -51.17 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.79 Total: -19.24 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.02 -5.70 -37.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238615718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.505 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds