Wall clock time and date at job start Mon Mar 30 2020 03:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38568 * 120.45752 * 99.71723 * 12 9 7 14 14 C 1.38731 * 118.47416 * 179.78299 * 13 12 9 15 15 Cl 1.73606 * 120.33277 * 180.24239 * 14 13 12 16 16 C 1.38788 * 119.33260 * 0.49896 * 14 13 12 17 17 N 1.31445 * 120.88121 * 359.74245 * 16 14 13 18 18 C 1.32797 * 121.65225 * 0.02562 * 17 16 14 19 19 C 1.47996 * 119.71048 * 179.97438 * 18 17 16 20 20 O 1.21442 * 120.00089 * 180.02562 * 19 18 17 21 21 O 1.34690 * 120.00189 * 0.02562 * 19 18 17 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 24 24 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 25 25 H 1.07998 * 120.76307 * 0.02562 * 13 12 9 26 26 H 1.08003 * 119.56065 * 179.72469 * 16 14 13 27 27 H 0.96699 * 117.00220 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5337 -4.3094 1.1779 14 6 3.4374 -5.3609 1.1298 15 17 3.8473 -6.2314 2.5748 16 6 4.0144 -5.7064 -0.0842 17 7 3.7118 -5.0547 -1.1849 18 6 2.8484 -4.0457 -1.1823 19 6 2.5395 -3.3414 -2.4467 20 8 1.7511 -2.4177 -2.4502 21 8 3.1327 -3.7248 -3.5935 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.1578 -3.4134 1.1912 24 1 0.9638 -2.5251 2.0390 25 1 2.0740 -4.0183 2.1108 26 1 4.7218 -6.5215 -0.1251 27 1 2.8996 -3.2344 -4.3937 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238615718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:38 Heat of formation + Delta-G solvation = -75.211570 kcal Electronic energy + Delta-G solvation = -16879.364685 eV Core-core repulsion = 13855.409697 eV Total energy + Delta-G solvation = -3023.954988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.06091 -40.43788 -37.90347 -37.56086 -36.66918 -34.01600 -32.91033 -31.73650 -27.93158 -26.34860 -25.33778 -22.87760 -22.50669 -19.47473 -19.01672 -18.47968 -17.93624 -17.29434 -16.80891 -16.38624 -15.83308 -15.49277 -15.25179 -15.13566 -14.44956 -14.10165 -13.96364 -13.47599 -13.15497 -12.74964 -12.59677 -12.44972 -12.41037 -11.96491 -11.30738 -11.27711 -10.94828 -10.55115 -10.38689 -9.97807 -9.42021 -8.34154 -6.14923 -0.77831 -0.02294 0.73861 1.33754 1.53549 1.62571 1.78144 1.91235 2.50695 2.66763 3.13585 3.36565 3.50414 3.59063 3.75404 4.05508 4.27584 4.44756 4.57286 4.79875 5.17348 5.26595 5.60522 5.90178 6.22637 6.41595 6.63724 6.81406 7.00495 7.05563 7.71802 9.05002 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.008336 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.860789 B = 3358.110667 C = 4175.166373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 1.105 2.895 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.587 4.587 8 H 0.024 0.976 9 C 0.240 3.760 10 H 0.048 0.952 11 N -0.837 5.837 12 C -0.064 4.064 13 C -0.089 4.089 14 C -0.045 4.045 15 Cl -0.024 7.024 16 C 0.094 3.906 17 N -0.429 5.429 18 C 0.064 3.936 19 C 0.523 3.477 20 O -0.488 6.488 21 O -0.497 6.497 22 H 0.279 0.721 23 H 0.321 0.679 24 H 0.332 0.668 25 H 0.160 0.840 26 H 0.208 0.792 27 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 -12.862 1.337 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.929 3.071 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.626 4.626 8 H 0.042 0.958 9 C 0.130 3.870 10 H 0.066 0.934 11 N -0.367 5.367 12 C -0.069 4.069 13 C -0.115 4.115 14 C -0.075 4.075 15 Cl 0.005 6.995 16 C -0.069 4.069 17 N -0.140 5.140 18 C -0.070 4.070 19 C 0.364 3.636 20 O -0.374 6.374 21 O -0.310 6.310 22 H 0.090 0.910 23 H 0.133 0.867 24 H 0.147 0.853 25 H 0.177 0.823 26 H 0.225 0.775 27 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 7.600 -10.781 0.714 13.209 hybrid contribution 0.087 -1.906 0.481 1.968 sum 7.687 -12.687 1.195 14.882 Atomic orbital electron populations 1.70608 1.07590 1.32091 1.45006 1.26674 0.96708 1.04774 0.92586 0.83098 0.73921 0.72683 0.77366 1.19888 1.21065 1.21225 1.21518 0.91939 0.91484 1.57611 0.95778 1.18408 0.88533 0.89400 0.90623 0.93443 1.59195 1.28750 1.43837 1.04951 1.22410 0.96667 0.95972 0.91855 1.21483 0.97233 0.93921 0.98893 1.22423 0.98487 0.95708 0.90840 1.98391 1.92154 1.74186 1.34765 1.23360 0.99013 0.99622 0.84920 1.67756 1.10931 1.04860 1.30415 1.19930 0.98956 0.96549 0.91603 1.20498 0.78204 0.80772 0.84133 1.91081 1.33045 1.27178 1.86079 1.84580 1.66203 1.61608 1.18598 0.90974 0.86663 0.85339 0.82301 0.77543 0.71139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.50 21.45 0.29 -55.91 15 2 C 0.00 -0.19 5.39 84.65 0.46 0.26 15 3 Si 1.10 51.89 29.90 68.60 2.05 53.94 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 7 C -0.59 -32.55 7.41 25.60 0.19 -32.36 15 8 H 0.02 1.37 7.74 -2.91 -0.02 1.35 15 9 C 0.24 11.65 1.75 43.42 0.08 11.73 15 10 H 0.05 2.66 5.79 -2.39 -0.01 2.65 15 11 N -0.84 -36.47 7.30 -174.95 -1.28 -37.75 15 12 C -0.06 -2.58 5.06 -19.52 -0.10 -2.67 15 13 C -0.09 -2.86 9.16 22.47 0.21 -2.66 15 14 C -0.05 -1.20 6.36 22.52 0.14 -1.06 15 15 Cl -0.02 -0.49 28.99 -2.72 -0.08 -0.57 15 16 C 0.09 2.46 10.99 84.88 0.93 3.39 15 17 N -0.43 -14.36 10.12 -184.86 -1.87 -16.23 15 18 C 0.06 2.53 6.74 41.85 0.28 2.81 15 19 C 0.52 21.23 8.26 70.41 0.58 21.81 15 20 O -0.49 -23.69 13.09 20.02 0.26 -23.43 15 21 O -0.50 -15.55 13.24 -55.99 -0.74 -16.29 15 22 H 0.28 17.22 6.39 -92.70 -0.59 16.63 15 23 H 0.32 12.02 9.06 -89.69 -0.81 11.20 15 24 H 0.33 13.44 7.34 -89.70 -0.66 12.78 15 25 H 0.16 4.67 6.38 -2.91 -0.02 4.65 15 26 H 0.21 3.64 8.06 -2.91 -0.02 3.62 15 27 H 0.43 8.94 9.11 -74.06 -0.67 8.27 15 Total: -1.00 -70.69 258.44 0.71 -69.98 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.70 Total: 25.00 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 2.77 Total: 1.26 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -2.86 Total: -109.89 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.48 Total: -39.72 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -70.69 0.71 -69.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238615718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds