Wall clock time and date at job start Mon Mar 30 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38360 * 120.32677 * 79.99926 * 12 9 7 14 14 N 1.31917 * 121.11307 * 179.97438 * 13 12 9 15 15 C 1.31814 * 121.87040 * 0.02562 * 14 13 12 16 16 Cl 1.73603 * 119.74328 * 180.02562 * 15 14 13 17 17 C 1.39764 * 120.51943 * 359.97438 * 15 14 13 18 18 C 1.47628 * 120.57684 * 179.97438 * 17 15 14 19 19 O 1.21483 * 120.00036 * 0.02562 * 18 17 15 20 20 O 1.34721 * 120.00244 * 180.02562 * 18 17 15 21 21 C 1.38339 * 120.32242 * 259.71765 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 24 24 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 25 25 H 1.07999 * 119.44128 * 359.95175 * 13 12 9 26 26 H 0.96697 * 117.00459 * 180.02562 * 20 18 17 27 27 H 1.07997 * 120.85219 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.8417 -4.0461 1.1640 14 7 3.7009 -5.0471 1.1776 15 6 4.0167 -5.7081 0.0817 16 17 5.1540 -7.0172 0.1631 17 6 3.4423 -5.3640 -1.1451 18 6 3.7955 -6.1031 -2.3733 19 8 4.5914 -7.0195 -2.3230 20 8 3.2353 -5.7613 -3.5498 21 6 2.5222 -4.3088 -1.1883 22 1 -0.4850 0.8401 -0.0004 23 1 0.9642 -2.5347 2.0330 24 1 -0.3010 -1.8627 1.1883 25 1 2.6120 -3.5311 2.0851 26 1 3.4973 -6.2744 -4.3264 27 1 2.0558 -4.0183 -2.1181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238623261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:48 Heat of formation + Delta-G solvation = -61.615895 kcal Electronic energy + Delta-G solvation = -16349.065425 eV Core-core repulsion = 13325.699990 eV Total energy + Delta-G solvation = -3023.365435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.53469 -39.29767 -36.52820 -35.90939 -35.12816 -32.56503 -31.88519 -29.69400 -26.29036 -25.03980 -23.44579 -22.49356 -20.21812 -17.97905 -17.35176 -16.81021 -16.49558 -16.12013 -15.62775 -15.07420 -14.24415 -13.98598 -13.63640 -13.13891 -12.99454 -12.81679 -11.94488 -11.64712 -11.51020 -11.43189 -11.24294 -11.08932 -10.95920 -10.46803 -10.24575 -9.93388 -9.68056 -9.27333 -8.85006 -8.46509 -7.45333 -6.29708 -4.47810 0.66278 1.45240 2.03131 2.66894 3.00745 3.13917 3.19968 3.22863 3.95924 4.19795 4.70227 4.87823 5.00641 5.13471 5.32492 5.60987 5.76239 6.07892 6.30541 6.47637 6.54308 6.77162 7.31856 7.54051 7.80068 7.91294 7.94177 8.41122 8.67575 8.86289 9.25458 10.68678 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.005898 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.055716 B = 4746.255211 C = 5043.571730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.245 3.755 10 H 0.056 0.944 11 N -0.850 5.850 12 C -0.081 4.081 13 C 0.157 3.843 14 N -0.485 5.485 15 C 0.205 3.795 16 Cl -0.014 7.014 17 C -0.172 4.172 18 C 0.531 3.469 19 O -0.499 6.499 20 O -0.509 6.509 21 C -0.015 4.015 22 H 0.269 0.731 23 H 0.313 0.687 24 H 0.361 0.639 25 H 0.170 0.830 26 H 0.412 0.588 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 -7.919 -2.865 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.594 4.594 8 H 0.075 0.925 9 C 0.135 3.865 10 H 0.074 0.926 11 N -0.381 5.381 12 C -0.084 4.084 13 C 0.001 3.999 14 N -0.195 5.195 15 C 0.039 3.961 16 Cl 0.015 6.985 17 C -0.176 4.176 18 C 0.374 3.626 19 O -0.388 6.388 20 O -0.321 6.321 21 C -0.041 4.041 22 H 0.079 0.921 23 H 0.122 0.878 24 H 0.178 0.822 25 H 0.187 0.813 26 H 0.271 0.729 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.414 -8.897 -1.990 10.129 hybrid contribution 0.772 1.789 -1.100 2.238 sum 5.186 -7.108 -3.090 9.326 Atomic orbital electron populations 1.69715 1.05894 1.27799 1.49258 1.24996 0.94971 0.99454 0.93805 0.86509 0.79563 0.82208 0.78942 1.20033 1.21038 1.20024 1.21701 0.93635 0.90646 1.53458 0.92455 1.17984 0.88673 0.87214 0.92661 0.92582 1.59551 1.18381 1.56477 1.03696 1.21640 0.97704 0.96783 0.92254 1.22815 0.88330 0.89606 0.99198 1.67178 1.15579 1.08292 1.28492 1.21559 0.93363 0.92369 0.88796 1.98411 1.57584 1.44139 1.98390 1.19549 1.05091 1.02042 0.90956 1.20521 0.77636 0.81082 0.83313 1.90947 1.32546 1.28823 1.86488 1.84588 1.67172 1.61858 1.18471 1.21837 0.92127 0.90141 0.99978 0.92055 0.87777 0.82156 0.81317 0.72932 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.48 11.55 55.43 0.64 -21.84 15 2 C 0.07 1.77 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.55 -13.45 8.70 -34.44 -0.30 -13.75 15 8 H 0.06 1.41 7.74 -52.49 -0.41 1.01 15 9 C 0.25 5.39 2.96 -70.02 -0.21 5.18 15 10 H 0.06 1.34 8.03 -51.93 -0.42 0.92 15 11 N -0.85 -17.90 9.02 -6.65 -0.06 -17.96 15 12 C -0.08 -1.56 4.90 -104.54 -0.51 -2.07 15 13 C 0.16 2.86 10.45 -17.47 -0.18 2.67 15 14 N -0.48 -8.89 10.33 -10.00 -0.10 -8.99 15 15 C 0.20 3.65 7.32 -16.99 -0.12 3.53 15 16 Cl -0.01 -0.23 26.20 -51.86 -1.36 -1.59 15 17 C -0.17 -2.91 5.89 -104.81 -0.62 -3.53 15 18 C 0.53 8.06 8.27 34.56 0.29 8.34 15 19 O -0.50 -8.24 14.79 -19.25 -0.28 -8.53 15 20 O -0.51 -6.01 12.76 -40.55 -0.52 -6.52 15 21 C -0.01 -0.26 9.37 -38.86 -0.36 -0.63 15 22 H 0.27 6.58 8.31 -40.82 -0.34 6.24 15 23 H 0.31 6.12 7.35 -39.29 -0.29 5.83 15 24 H 0.36 8.26 7.09 -39.29 -0.28 7.98 15 25 H 0.17 2.84 6.66 -52.49 -0.35 2.49 15 26 H 0.41 2.70 9.11 45.56 0.42 3.12 15 27 H 0.15 2.48 7.70 -52.49 -0.40 2.07 15 LS Contribution 260.74 15.07 3.93 3.93 Total: -1.00 -27.09 260.74 -5.76 -32.84 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.86 Total: 12.70 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.12 Total: 1.42 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.48 Total: -48.79 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.80 Total: -15.05 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.36 Total: -1.59 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.09 -5.76 -32.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.771 kcal (2) G-P(sol) polarization free energy of solvation -27.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds