Wall clock time and date at job start Mon Mar 30 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38360 * 120.32677 * 79.99926 * 12 9 7 14 14 N 1.31917 * 121.11307 * 179.97438 * 13 12 9 15 15 C 1.31814 * 121.87040 * 0.02562 * 14 13 12 16 16 Cl 1.73603 * 119.74328 * 180.02562 * 15 14 13 17 17 C 1.39764 * 120.51943 * 359.97438 * 15 14 13 18 18 C 1.47628 * 120.57684 * 179.97438 * 17 15 14 19 19 O 1.21483 * 120.00036 * 0.02562 * 18 17 15 20 20 O 1.34721 * 120.00244 * 180.02562 * 18 17 15 21 21 C 1.38339 * 120.32242 * 259.71765 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 24 24 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 25 25 H 1.07999 * 119.44128 * 359.95175 * 13 12 9 26 26 H 0.96697 * 117.00459 * 180.02562 * 20 18 17 27 27 H 1.07997 * 120.85219 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.8417 -4.0461 1.1640 14 7 3.7009 -5.0471 1.1776 15 6 4.0167 -5.7081 0.0817 16 17 5.1540 -7.0172 0.1631 17 6 3.4423 -5.3640 -1.1451 18 6 3.7955 -6.1031 -2.3733 19 8 4.5914 -7.0195 -2.3230 20 8 3.2353 -5.7613 -3.5498 21 6 2.5222 -4.3088 -1.1883 22 1 -0.4850 0.8401 -0.0004 23 1 0.9642 -2.5347 2.0330 24 1 -0.3010 -1.8627 1.1883 25 1 2.6120 -3.5311 2.0851 26 1 3.4973 -6.2744 -4.3264 27 1 2.0558 -4.0183 -2.1181 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:47 Heat of formation + Delta-G solvation = -81.056747 kcal Electronic energy + Delta-G solvation = -16349.908444 eV Core-core repulsion = 13325.699990 eV Total energy + Delta-G solvation = -3024.208453 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.040 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83928 -40.55596 -37.87776 -37.02899 -36.78633 -34.05480 -33.54423 -31.24009 -28.06277 -26.43530 -24.93687 -23.91828 -21.66101 -19.17945 -18.70552 -18.57962 -17.84715 -17.50064 -16.81600 -16.78490 -15.92939 -15.37814 -14.87840 -14.73791 -14.59948 -14.17088 -13.49709 -13.34973 -12.93000 -12.80384 -12.66708 -12.56094 -12.52234 -12.14195 -11.96665 -11.34817 -11.07841 -10.79881 -10.58696 -9.94288 -9.21761 -8.14591 -6.39514 -0.68480 0.02314 0.66820 1.41169 1.42427 1.45313 1.50840 1.90544 2.36226 2.59191 3.05413 3.33366 3.55059 3.85488 3.92559 4.18001 4.47664 4.54671 4.77863 4.97174 5.32487 5.51041 5.58394 5.63436 5.98561 6.48385 6.61306 6.87884 6.94976 7.09916 7.37319 8.80397 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.028592 B = 0.005898 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.055716 B = 4746.255211 C = 5043.571730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.050 0.950 9 C 0.251 3.749 10 H 0.032 0.968 11 N -0.844 5.844 12 C -0.098 4.098 13 C 0.157 3.843 14 N -0.492 5.492 15 C 0.197 3.803 16 Cl -0.002 7.002 17 C -0.173 4.173 18 C 0.539 3.461 19 O -0.514 6.514 20 O -0.500 6.500 21 C -0.009 4.009 22 H 0.270 0.730 23 H 0.321 0.679 24 H 0.352 0.648 25 H 0.179 0.821 26 H 0.437 0.563 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -8.219 -3.374 10.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.169 4.169 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.068 0.932 9 C 0.140 3.860 10 H 0.050 0.950 11 N -0.373 5.373 12 C -0.100 4.100 13 C 0.001 3.999 14 N -0.203 5.203 15 C 0.031 3.969 16 Cl 0.027 6.973 17 C -0.178 4.178 18 C 0.383 3.617 19 O -0.404 6.404 20 O -0.314 6.314 21 C -0.035 4.035 22 H 0.079 0.921 23 H 0.132 0.868 24 H 0.167 0.833 25 H 0.196 0.804 26 H 0.300 0.700 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.092 -9.215 -2.521 10.826 hybrid contribution 0.579 1.811 -1.001 2.148 sum 5.671 -7.404 -3.521 9.969 Atomic orbital electron populations 1.69799 1.06741 1.28265 1.49924 1.25595 0.95615 1.01921 0.93763 0.85681 0.78428 0.79275 0.78657 1.20194 1.20915 1.19860 1.21922 0.93391 0.91909 1.53099 0.93214 1.17755 0.88619 0.87626 0.91954 0.94986 1.59507 1.18142 1.55761 1.03938 1.21416 0.98195 0.96925 0.93501 1.22901 0.88139 0.89611 0.99257 1.67218 1.15753 1.08438 1.28912 1.21827 0.93446 0.92503 0.89106 1.98413 1.57084 1.43472 1.98381 1.19684 1.04453 1.01785 0.91831 1.20141 0.77411 0.80500 0.83683 1.90947 1.33249 1.29361 1.86870 1.84529 1.66401 1.62039 1.18450 1.21936 0.91835 0.89825 0.99860 0.92105 0.86814 0.83300 0.80405 0.70013 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.87 11.55 21.45 0.25 -45.62 15 2 C 0.03 1.60 5.38 84.66 0.46 2.06 15 3 Si 0.95 39.70 29.54 68.60 2.03 41.72 15 4 H -0.28 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 7 C -0.56 -27.16 8.70 25.60 0.22 -26.94 15 8 H 0.05 2.43 7.74 -2.91 -0.02 2.41 15 9 C 0.25 11.02 2.96 43.42 0.13 11.15 15 10 H 0.03 1.55 8.03 -2.39 -0.02 1.53 15 11 N -0.84 -35.39 9.02 -174.96 -1.58 -36.96 15 12 C -0.10 -3.69 4.90 -19.81 -0.10 -3.79 15 13 C 0.16 5.59 10.45 84.71 0.89 6.47 15 14 N -0.49 -17.50 10.33 -185.55 -1.92 -19.41 15 15 C 0.20 6.74 7.32 85.06 0.62 7.36 15 16 Cl 0.00 -0.07 26.20 -2.72 -0.07 -0.14 15 17 C -0.17 -5.59 5.89 -19.98 -0.12 -5.71 15 18 C 0.54 15.15 8.27 70.30 0.58 15.73 15 19 O -0.51 -15.86 14.79 19.89 0.29 -15.57 15 20 O -0.50 -10.36 12.76 -56.31 -0.72 -11.08 15 21 C -0.01 -0.30 9.37 22.74 0.21 -0.08 15 22 H 0.27 13.10 8.31 -92.70 -0.77 12.33 15 23 H 0.32 12.43 7.35 -89.69 -0.66 11.77 15 24 H 0.35 16.11 7.09 -89.69 -0.64 15.48 15 25 H 0.18 5.84 6.66 -2.91 -0.02 5.83 15 26 H 0.44 4.28 9.11 -74.06 -0.67 3.61 15 27 H 0.17 5.10 7.70 -2.91 -0.02 5.08 15 Total: -1.00 -55.54 260.74 0.47 -55.06 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.70 Total: 25.74 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 2.89 Total: 6.26 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.25 Total: -102.00 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.42 Total: -26.65 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -0.07 Total: -0.14 kcal Total: -55.54 0.47 -55.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.996 kcal (2) G-P(sol) polarization free energy of solvation -55.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds