Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 119.99933 * 2 1 4 4 H 1.48503 * 109.47290 * 95.27401 * 3 2 1 5 5 H 1.48500 * 109.47114 * 215.27464 * 3 2 1 6 6 H 1.48498 * 109.47480 * 335.27627 * 3 2 1 7 7 C 1.40163 * 120.00032 * 180.27936 * 2 1 3 8 8 H 1.08006 * 120.00095 * 10.69357 * 7 2 1 9 9 C 1.40243 * 119.99890 * 190.68913 * 7 2 1 10 10 C 1.39794 * 126.65921 * 22.18398 * 9 7 2 11 11 C 1.38702 * 107.53684 * 179.89676 * 10 9 7 12 12 N 1.31237 * 109.07562 * 0.36906 * 11 10 9 13 13 N 1.37459 * 126.65825 * 202.48680 * 9 7 2 14 14 C 1.46497 * 126.20468 * 359.95356 * 13 9 7 15 15 H 1.08995 * 109.64478 * 0.42295 * 14 13 9 16 16 C 1.53883 * 109.64688 * 239.99554 * 14 13 9 17 17 C 1.55044 * 106.62573 * 192.96647 * 16 14 13 18 18 S 1.83291 * 102.56584 * 42.43351 * 17 16 14 19 19 O 1.42095 * 109.35370 * 90.18872 * 18 17 16 20 20 O 1.42096 * 109.35017 * 223.38568 * 18 17 16 21 21 C 1.54167 * 109.64793 * 120.72288 * 14 13 9 22 22 H 0.96999 * 120.00271 * 359.71794 * 1 2 3 23 23 H 1.08005 * 126.23619 * 359.97438 * 10 9 7 24 24 H 1.08006 * 125.46345 * 180.10347 * 11 10 9 25 25 H 1.09006 * 110.02177 * 312.25978 * 16 14 13 26 26 H 1.09003 * 110.02756 * 73.67231 * 16 14 13 27 27 H 1.09005 * 110.78589 * 160.69949 * 17 16 14 28 28 H 1.08991 * 110.79093 * 284.16357 * 17 16 14 29 29 H 1.09004 * 110.31251 * 266.65876 * 21 14 13 30 30 H 1.08996 * 110.32129 * 28.85585 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.6005 1.9821 1.3942 5 1 3.4789 1.4749 -0.8085 6 1 1.3878 2.6823 -0.5856 7 6 2.0084 -1.2138 -0.0059 8 1 1.4825 -2.1402 -0.1840 9 6 3.3926 -1.2254 0.2193 10 6 4.1405 -0.2402 0.8706 11 6 5.4644 -0.6541 0.8735 12 7 5.5530 -1.8121 0.2623 13 7 4.2780 -2.2051 -0.1626 14 6 3.9476 -3.4370 -0.8832 15 1 2.8771 -3.4669 -1.0862 16 6 4.3472 -4.6563 -0.0337 17 6 4.2837 -5.8898 -0.9709 18 16 5.0500 -5.2596 -2.5120 19 8 6.4506 -5.4961 -2.4724 20 8 4.2879 -5.6957 -3.6292 21 6 4.7262 -3.4844 -2.2130 22 1 -0.4850 0.8400 0.0041 23 1 3.7573 0.6759 1.2953 24 1 6.2905 -0.1087 1.3055 25 1 5.3602 -4.5293 0.3481 26 1 3.6486 -4.7798 0.7938 27 1 4.8630 -6.7173 -0.5610 28 1 3.2506 -6.1892 -1.1469 29 1 4.1226 -3.0686 -3.0198 30 1 5.6651 -2.9385 -2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258307545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = 0.048715 kcal Electronic energy + Delta-G solvation = -17174.907667 eV Core-core repulsion = 14292.093011 eV Total energy + Delta-G solvation = -2882.814656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57423 -36.99112 -36.27577 -35.87090 -33.74524 -31.02556 -30.00556 -28.56613 -25.16212 -24.73302 -21.86244 -20.42289 -18.95212 -18.77335 -17.41786 -16.67453 -16.33768 -15.85526 -15.53488 -14.40570 -14.27329 -14.11112 -13.51172 -13.42554 -13.12832 -12.48968 -12.17926 -12.11818 -11.99625 -11.95612 -11.81150 -11.62535 -11.12672 -11.08413 -10.65526 -10.38558 -10.25861 -9.91311 -9.44730 -9.13992 -8.21566 -7.36276 -7.07125 -4.78019 0.07960 2.51017 2.85193 3.12206 3.23276 3.33705 3.52121 3.64898 3.92387 4.01982 4.10642 4.46157 4.60197 4.73969 4.90213 5.03630 5.09645 5.49535 5.57300 5.74676 5.92894 6.10122 6.11837 6.67573 6.74409 7.02007 7.21866 7.63998 8.01852 8.06737 8.37816 8.72029 9.13453 9.94200 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.006844 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.217888 B = 4090.388329 C = 4479.035816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.098 3.902 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.246 1.246 6 H -0.298 1.298 7 C -0.452 4.452 8 H 0.092 0.908 9 C 0.262 3.738 10 C -0.428 4.428 11 C 0.074 3.926 12 N -0.381 5.381 13 N -0.417 5.417 14 C 0.196 3.804 15 H 0.116 0.884 16 C -0.130 4.130 17 C -0.584 4.584 18 S 2.391 3.609 19 O -0.938 6.938 20 O -0.943 6.943 21 C -0.600 4.600 22 H 0.290 0.710 23 H 0.123 0.877 24 H 0.154 0.846 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 -5.881 -1.310 7.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.124 4.124 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.169 1.169 6 H -0.227 1.227 7 C -0.488 4.488 8 H 0.110 0.890 9 C 0.143 3.857 10 C -0.458 4.458 11 C -0.108 4.108 12 N -0.202 5.202 13 N -0.205 5.205 14 C 0.089 3.911 15 H 0.134 0.866 16 C -0.170 4.170 17 C -0.715 4.715 18 S 2.574 3.426 19 O -0.935 6.935 20 O -0.940 6.940 21 C -0.730 4.730 22 H 0.100 0.900 23 H 0.140 0.860 24 H 0.171 0.829 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.159 0.841 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.166 -7.304 -2.512 9.292 hybrid contribution -0.808 1.880 1.042 2.297 sum 4.358 -5.424 -1.469 7.111 Atomic orbital electron populations 1.69547 1.07950 1.30725 1.34922 1.25916 0.94787 1.01556 0.90101 0.86097 0.79633 0.78571 0.79813 1.19384 1.16945 1.22664 1.18457 0.88694 0.96177 1.45439 0.89039 1.18810 0.90629 0.86105 0.90163 1.21208 0.94077 1.06241 1.24323 1.22925 0.96636 0.93758 0.97519 1.76869 1.00475 1.17013 1.25793 1.48350 1.04789 1.17265 1.50072 1.21005 0.99951 0.83253 0.86856 0.86576 1.22619 1.05917 0.89317 0.99102 1.30570 1.14065 1.07422 1.19413 1.08946 0.76105 0.79693 0.77875 1.93608 1.28916 1.83910 1.87031 1.93598 1.72563 1.79703 1.48150 1.30916 1.11852 1.23691 1.06558 0.89981 0.85995 0.82864 0.88355 0.88168 0.84407 0.84276 0.84061 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.20 13.92 55.56 0.77 -19.43 16 2 C 0.10 2.43 5.52 -17.29 -0.10 2.34 16 3 Si 0.93 20.39 24.52 -169.99 -4.17 16.22 16 4 H -0.27 -5.75 6.48 56.52 0.37 -5.39 16 5 H -0.25 -5.60 6.70 56.52 0.38 -5.22 16 6 H -0.30 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.45 -11.32 9.43 -38.11 -0.36 -11.68 16 8 H 0.09 2.30 7.31 -52.48 -0.38 1.92 16 9 C 0.26 6.33 6.29 -84.01 -0.53 5.80 16 10 C -0.43 -10.14 8.15 -38.83 -0.32 -10.45 16 11 C 0.07 1.61 11.93 -17.63 -0.21 1.40 16 12 N -0.38 -8.37 12.04 30.45 0.37 -8.00 16 13 N -0.42 -8.99 3.37 -51.12 -0.17 -9.17 16 14 C 0.20 3.28 3.37 -66.86 -0.23 3.06 16 15 H 0.12 1.87 6.92 -51.93 -0.36 1.51 16 16 C -0.13 -1.78 6.05 -25.19 -0.15 -1.94 16 17 C -0.58 -6.08 7.31 38.24 0.28 -5.80 16 18 S 2.39 31.00 6.11 -107.50 -0.66 30.35 16 19 O -0.94 -15.13 18.14 -57.71 -1.05 -16.17 16 20 O -0.94 -14.60 18.14 -57.71 -1.05 -15.65 16 21 C -0.60 -8.77 6.92 37.77 0.26 -8.51 16 22 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 23 H 0.12 2.85 4.10 -52.48 -0.22 2.63 16 24 H 0.15 2.74 8.06 -52.48 -0.42 2.32 16 25 H 0.10 1.43 8.06 -51.93 -0.42 1.01 16 26 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.14 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.14 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.15 2.37 7.75 -51.93 -0.40 1.97 16 LS Contribution 264.56 15.07 3.99 3.99 Total: -1.00 -32.28 264.56 -6.40 -38.68 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -3.09 Total: 4.97 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: -1.35 Total: -25.78 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.97 Total: -36.60 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -2.09 Total: -31.83 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.17 Total: 16.22 kcal Atomic # 16 Polarization: 31.00 SS G_CDS: -0.66 Total: 30.35 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.28 -6.40 -38.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258307545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.726 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds