Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30760 * 1 3 3 Si 1.86796 * 119.99933 * 2 1 4 4 H 1.48503 * 109.47290 * 95.27401 * 3 2 1 5 5 H 1.48500 * 109.47114 * 215.27464 * 3 2 1 6 6 H 1.48498 * 109.47480 * 335.27627 * 3 2 1 7 7 C 1.40163 * 120.00032 * 180.27936 * 2 1 3 8 8 H 1.08006 * 120.00095 * 10.69357 * 7 2 1 9 9 C 1.40243 * 119.99890 * 190.68913 * 7 2 1 10 10 C 1.39794 * 126.65921 * 22.18398 * 9 7 2 11 11 C 1.38702 * 107.53684 * 179.89676 * 10 9 7 12 12 N 1.31237 * 109.07562 * 0.36906 * 11 10 9 13 13 N 1.37459 * 126.65825 * 202.48680 * 9 7 2 14 14 C 1.46497 * 126.20468 * 359.95356 * 13 9 7 15 15 H 1.08995 * 109.64478 * 0.42295 * 14 13 9 16 16 C 1.53883 * 109.64688 * 239.99554 * 14 13 9 17 17 C 1.55044 * 106.62573 * 192.96647 * 16 14 13 18 18 S 1.83291 * 102.56584 * 42.43351 * 17 16 14 19 19 O 1.42095 * 109.35370 * 90.18872 * 18 17 16 20 20 O 1.42096 * 109.35017 * 223.38568 * 18 17 16 21 21 C 1.54167 * 109.64793 * 120.72288 * 14 13 9 22 22 H 0.96999 * 120.00271 * 359.71794 * 1 2 3 23 23 H 1.08005 * 126.23619 * 359.97438 * 10 9 7 24 24 H 1.08006 * 125.46345 * 180.10347 * 11 10 9 25 25 H 1.09006 * 110.02177 * 312.25978 * 16 14 13 26 26 H 1.09003 * 110.02756 * 73.67231 * 16 14 13 27 27 H 1.09005 * 110.78589 * 160.69949 * 17 16 14 28 28 H 1.08991 * 110.79093 * 284.16357 * 17 16 14 29 29 H 1.09004 * 110.31251 * 266.65876 * 21 14 13 30 30 H 1.08996 * 110.32129 * 28.85585 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.6005 1.9821 1.3942 5 1 3.4789 1.4749 -0.8085 6 1 1.3878 2.6823 -0.5856 7 6 2.0084 -1.2138 -0.0059 8 1 1.4825 -2.1402 -0.1840 9 6 3.3926 -1.2254 0.2193 10 6 4.1405 -0.2402 0.8706 11 6 5.4644 -0.6541 0.8735 12 7 5.5530 -1.8121 0.2623 13 7 4.2780 -2.2051 -0.1626 14 6 3.9476 -3.4370 -0.8832 15 1 2.8771 -3.4669 -1.0862 16 6 4.3472 -4.6563 -0.0337 17 6 4.2837 -5.8898 -0.9709 18 16 5.0500 -5.2596 -2.5120 19 8 6.4506 -5.4961 -2.4724 20 8 4.2879 -5.6957 -3.6292 21 6 4.7262 -3.4844 -2.2130 22 1 -0.4850 0.8400 0.0041 23 1 3.7573 0.6759 1.2953 24 1 6.2905 -0.1087 1.3055 25 1 5.3602 -4.5293 0.3481 26 1 3.6486 -4.7798 0.7938 27 1 4.8630 -6.7173 -0.5610 28 1 3.2506 -6.1892 -1.1469 29 1 4.1226 -3.0686 -3.0198 30 1 5.6651 -2.9385 -2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258307545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = -24.800387 kcal Electronic energy + Delta-G solvation = -17175.985205 eV Core-core repulsion = 14292.093011 eV Total energy + Delta-G solvation = -2883.892194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26846 -38.17132 -37.53585 -37.07257 -35.59518 -32.47309 -31.65911 -29.96959 -26.95807 -25.97257 -23.20092 -22.20156 -20.49216 -19.88800 -19.10184 -17.97425 -17.75708 -17.24320 -16.69323 -16.01044 -15.79120 -15.37641 -14.95581 -14.91027 -14.66933 -13.97117 -13.59428 -13.44952 -13.32691 -13.22156 -13.16866 -13.04327 -12.78292 -12.42114 -12.14163 -11.87650 -11.67506 -11.38191 -11.23399 -10.88935 -9.95112 -9.12939 -8.92819 -6.66475 -0.99962 1.05802 1.34499 1.42235 1.51266 1.60494 2.04235 2.14278 2.25029 2.53934 3.01763 3.06473 3.27440 3.52402 3.64900 3.82352 3.98188 4.28352 4.50353 4.57170 4.73832 4.77918 4.93818 4.96950 5.05068 5.22549 5.41386 5.85321 6.14817 6.33835 6.53120 6.92720 7.37880 8.13056 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.006844 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.217888 B = 4090.388329 C = 4479.035816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.067 3.933 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.285 1.285 7 C -0.473 4.473 8 H 0.077 0.923 9 C 0.243 3.757 10 C -0.444 4.444 11 C 0.069 3.931 12 N -0.381 5.381 13 N -0.416 5.416 14 C 0.175 3.825 15 H 0.118 0.882 16 C -0.128 4.128 17 C -0.552 4.552 18 S 2.418 3.582 19 O -0.968 6.968 20 O -0.966 6.966 21 C -0.605 4.605 22 H 0.298 0.702 23 H 0.123 0.877 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.147 0.853 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -6.686 -0.878 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.152 4.152 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.213 1.213 7 C -0.509 4.509 8 H 0.096 0.904 9 C 0.122 3.878 10 C -0.474 4.474 11 C -0.115 4.115 12 N -0.202 5.202 13 N -0.204 5.204 14 C 0.070 3.930 15 H 0.136 0.864 16 C -0.167 4.167 17 C -0.685 4.685 18 S 2.603 3.397 19 O -0.965 6.965 20 O -0.963 6.963 21 C -0.734 4.734 22 H 0.109 0.891 23 H 0.140 0.860 24 H 0.207 0.793 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.189 0.811 28 H 0.187 0.813 29 H 0.166 0.834 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.820 -8.109 -2.113 10.203 hybrid contribution -0.958 2.040 0.924 2.436 sum 4.863 -6.069 -1.190 7.867 Atomic orbital electron populations 1.69558 1.08681 1.31823 1.36226 1.26472 0.95319 1.03568 0.89829 0.85382 0.78148 0.76323 0.79784 1.18664 1.18552 1.21282 1.18491 0.89333 0.96052 1.46997 0.90449 1.18915 0.90695 0.87445 0.90771 1.21466 0.95116 1.06400 1.24441 1.23473 0.97047 0.93656 0.97290 1.76823 1.00940 1.17185 1.25205 1.48688 1.04080 1.18112 1.49472 1.21494 1.00641 0.82890 0.87935 0.86420 1.22550 1.05581 0.89199 0.99365 1.30460 1.16050 1.06677 1.15310 1.08157 0.75071 0.78128 0.78373 1.93565 1.31187 1.83843 1.87880 1.93565 1.72806 1.79489 1.50453 1.30933 1.10880 1.25858 1.05715 0.89123 0.85951 0.79290 0.89010 0.87445 0.81065 0.81344 0.83437 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.21 13.92 21.87 0.30 -41.91 16 2 C 0.07 3.33 5.52 85.32 0.47 3.80 16 3 Si 0.98 41.73 24.52 68.60 1.68 43.41 16 4 H -0.26 -10.74 6.48 99.48 0.64 -10.09 16 5 H -0.26 -11.68 6.70 99.48 0.67 -11.02 16 6 H -0.29 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.47 -24.01 9.43 23.23 0.22 -23.79 16 8 H 0.08 4.00 7.31 -2.91 -0.02 3.98 16 9 C 0.24 11.70 6.29 39.13 0.25 11.95 16 10 C -0.44 -20.67 8.15 22.76 0.19 -20.48 16 11 C 0.07 2.86 11.93 84.89 1.01 3.87 16 12 N -0.38 -16.28 12.04 -57.57 -0.69 -16.97 16 13 N -0.42 -17.71 3.37 -315.65 -1.06 -18.77 16 14 C 0.18 5.71 3.37 45.68 0.15 5.86 16 15 H 0.12 3.76 6.92 -2.39 -0.02 3.74 16 16 C -0.13 -3.19 6.05 31.59 0.19 -3.00 16 17 C -0.55 -9.39 7.31 72.68 0.53 -8.86 16 18 S 2.42 58.38 6.11 -56.49 -0.34 58.04 16 19 O -0.97 -29.80 18.14 -127.49 -2.31 -32.11 16 20 O -0.97 -28.32 18.14 -127.49 -2.31 -30.63 16 21 C -0.61 -17.33 6.92 72.38 0.50 -16.83 16 22 H 0.30 13.59 8.29 -92.71 -0.77 12.83 16 23 H 0.12 5.59 4.10 -2.91 -0.01 5.58 16 24 H 0.19 6.25 8.06 -2.91 -0.02 6.22 16 25 H 0.09 2.46 8.06 -2.38 -0.02 2.44 16 26 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.17 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.17 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.13 4.28 7.75 -2.39 -0.02 4.26 16 Total: -1.00 -68.60 264.56 -0.17 -68.77 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.06 Total: 17.67 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 3.51 Total: -47.49 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.45 Total: -77.65 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -4.63 Total: -62.75 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.68 Total: 43.41 kcal Atomic # 16 Polarization: 58.38 SS G_CDS: -0.34 Total: 58.04 kcal Total: -68.60 -0.17 -68.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258307545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds