Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35636 * 117.00494 * 2 1 4 4 C 1.38449 * 120.26185 * 359.97438 * 3 2 1 5 5 C 1.38308 * 120.04981 * 180.02562 * 4 3 2 6 6 C 1.38822 * 120.59387 * 359.97438 * 5 4 3 7 7 C 1.36493 * 120.53699 * 359.73565 * 6 5 4 8 8 S 1.76200 * 120.03909 * 180.26137 * 7 6 5 9 9 C 1.81399 * 104.45214 * 115.27760 * 8 7 6 10 10 O 1.42099 * 104.27701 * 231.34932 * 8 7 6 11 11 O 1.42100 * 104.27305 * 359.20776 * 8 7 6 12 12 C 1.40729 * 119.92749 * 0.53503 * 7 6 5 13 13 C 1.41151 * 120.29446 * 179.74013 * 12 7 6 14 14 H 1.07998 * 119.99901 * 319.91705 * 13 12 7 15 15 C 1.39934 * 120.00065 * 139.90789 * 13 12 7 16 16 N 1.30865 * 119.99891 * 340.92646 * 15 13 12 17 17 Si 1.86802 * 119.99859 * 161.20951 * 15 13 12 18 18 H 1.48499 * 109.46507 * 269.72142 * 17 15 13 19 19 H 1.48494 * 109.47017 * 29.72157 * 17 15 13 20 20 H 1.48495 * 109.47079 * 149.72465 * 17 15 13 21 21 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47186 * 300.00346 * 1 2 3 23 23 H 1.09000 * 109.46877 * 59.99870 * 1 2 3 24 24 H 1.08000 * 119.97766 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.70795 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.73732 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.46549 * 59.99769 * 9 8 7 28 28 H 1.08995 * 109.47063 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47068 * 300.00318 * 9 8 7 30 30 H 0.96998 * 119.99481 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2963 2.3731 -0.0005 5 6 1.9288 3.6030 -0.0011 6 6 3.3146 3.6848 -0.0005 7 6 4.0762 2.5521 0.0059 8 16 5.8342 2.6712 0.0135 9 6 6.3294 1.9578 1.6061 10 8 6.2467 1.8338 -1.0579 11 8 6.0907 4.0687 -0.0082 12 6 3.4558 1.2889 0.0008 13 6 4.2359 0.1126 0.0019 14 1 5.1333 0.0592 -0.5966 15 6 3.8465 -0.9844 0.7785 16 7 3.0064 -0.8201 1.7683 17 14 4.5321 -2.6820 0.4072 18 1 3.6428 -3.3741 -0.5599 19 1 5.8911 -2.5501 -0.1765 20 1 4.6071 -3.4710 1.6630 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.2175 2.3212 -0.0005 25 1 1.3395 4.5080 -0.0019 26 1 3.7942 4.6525 -0.0014 27 1 5.9914 0.9229 1.6613 28 1 7.4151 1.9903 1.6968 29 1 5.8792 2.5308 2.4166 30 1 2.7363 -1.5806 2.3064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258345012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = -84.658324 kcal Electronic energy + Delta-G solvation = -17686.457382 eV Core-core repulsion = 14767.676803 eV Total energy + Delta-G solvation = -2918.780580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.76918 -36.10621 -36.07491 -34.90669 -33.81744 -30.38476 -29.06588 -28.56846 -26.55292 -25.26756 -21.46839 -21.13939 -18.15999 -17.76983 -16.65498 -15.59825 -15.24580 -15.02025 -14.95538 -14.56928 -14.45915 -14.23236 -12.90238 -12.60329 -12.54304 -12.35233 -12.07458 -11.79442 -11.41280 -11.35129 -11.17051 -11.11423 -10.82091 -10.61505 -10.54095 -10.14155 -10.09250 -9.96391 -9.20210 -9.17754 -7.98253 -7.10290 -6.90419 -4.67234 1.22303 2.27716 2.76549 3.03294 3.09805 3.11569 3.87014 4.04430 4.41989 4.51355 4.74603 5.16573 5.31426 5.56399 5.74096 5.83698 5.91547 5.96017 6.07277 6.19581 6.32748 6.51105 6.76771 6.95567 7.05188 7.36297 7.46983 7.64978 7.89523 8.12869 8.31756 8.58093 8.89842 9.98724 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.012796 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.106205 B = 2187.695958 C = 3382.101449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.280 6.280 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.213 4.213 6 C -0.033 4.033 7 C -0.729 4.729 8 S 2.515 3.485 9 C -0.649 4.649 10 O -0.953 6.953 11 O -0.979 6.979 12 C 0.184 3.816 13 C -0.491 4.491 14 H 0.119 0.881 15 C 0.091 3.909 16 N -0.754 5.754 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.255 1.255 20 H -0.278 1.278 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -0.280 1.747 1.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.192 6.192 3 C 0.031 3.969 4 C -0.189 4.189 5 C -0.233 4.233 6 C -0.053 4.053 7 C -0.823 4.823 8 S 2.700 3.300 9 C -0.798 4.798 10 O -0.950 6.950 11 O -0.976 6.976 12 C 0.179 3.821 13 C -0.519 4.519 14 H 0.136 0.864 15 C -0.132 4.132 16 N -0.376 5.376 17 Si 0.728 3.272 18 H -0.189 1.189 19 H -0.179 1.179 20 H -0.203 1.203 21 H 0.098 0.902 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.162 0.838 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.284 -0.251 1.326 1.379 hybrid contribution -1.041 -0.959 0.621 1.546 sum -1.325 -1.209 1.947 2.648 Atomic orbital electron populations 1.22755 0.82350 1.01737 0.99633 1.86185 1.17470 1.27045 1.88482 1.19428 0.92494 0.82962 1.01982 1.20893 0.97841 0.93153 1.07004 1.20235 0.93996 0.95601 1.13469 1.19956 0.93676 0.96107 0.95561 1.29145 1.22031 0.98530 1.32573 1.04061 0.75561 0.73554 0.76831 1.30094 1.09784 1.16259 1.23672 1.93479 1.82520 1.69083 1.49958 1.93433 1.85695 1.30988 1.87510 1.16387 0.88676 0.90826 0.86213 1.20182 1.11114 0.96652 1.23910 0.86392 1.25799 0.93413 1.00946 0.93072 1.69725 1.22976 1.33791 1.11088 0.86341 0.80986 0.80930 0.78970 1.18878 1.17856 1.20294 0.90171 0.94090 0.94505 0.88098 0.88415 0.86934 0.83828 0.87187 0.86182 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.82 101.05 0.99 1.56 16 2 O -0.28 -6.50 7.46 -18.61 -0.14 -6.64 16 3 C 0.08 1.90 6.17 -38.33 -0.24 1.67 16 4 C -0.17 -3.77 9.04 -39.48 -0.36 -4.12 16 5 C -0.21 -4.62 10.04 -39.34 -0.39 -5.02 16 6 C -0.03 -0.76 9.44 -40.00 -0.38 -1.13 16 7 C -0.73 -17.23 5.60 -39.27 -0.22 -17.45 16 8 S 2.51 52.62 5.27 -107.50 -0.57 52.06 16 9 C -0.65 -11.10 10.59 101.05 1.07 -10.03 16 10 O -0.95 -22.41 15.72 -57.54 -0.90 -23.32 16 11 O -0.98 -21.57 16.71 -57.54 -0.96 -22.53 16 12 C 0.18 4.65 5.35 -106.68 -0.57 4.08 16 13 C -0.49 -12.24 6.39 -37.84 -0.24 -12.48 16 14 H 0.12 2.95 5.87 -52.49 -0.31 2.64 16 15 C 0.09 2.14 4.44 -17.33 -0.08 2.07 16 16 N -0.75 -17.93 11.26 55.55 0.63 -17.31 16 17 Si 0.90 18.03 29.60 -169.99 -5.03 13.00 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 21 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.04 0.69 7.67 -51.93 -0.40 0.29 16 23 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 24 H 0.10 1.95 6.31 -52.49 -0.33 1.62 16 25 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 26 H 0.11 2.35 7.16 -52.49 -0.38 1.97 16 27 H 0.14 2.63 6.74 -51.92 -0.35 2.28 16 28 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.12 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -30.08 266.39 -6.36 -36.45 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -2.99 Total: 5.14 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: -0.41 Total: -40.86 kcal Atomic # 7 Polarization: -17.93 SS G_CDS: 0.63 Total: -17.31 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.00 Total: -52.49 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 16 Polarization: 52.62 SS G_CDS: -0.57 Total: 52.06 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.08 -6.36 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258345012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.213 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds