Wall clock time and date at job start Mon Mar 30 2020 04:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35636 * 117.00494 * 2 1 4 4 C 1.38449 * 120.26185 * 359.97438 * 3 2 1 5 5 C 1.38308 * 120.04981 * 180.02562 * 4 3 2 6 6 C 1.38822 * 120.59387 * 359.97438 * 5 4 3 7 7 C 1.36493 * 120.53699 * 359.73565 * 6 5 4 8 8 S 1.76200 * 120.03909 * 180.26137 * 7 6 5 9 9 C 1.81399 * 104.45214 * 115.27760 * 8 7 6 10 10 O 1.42099 * 104.27701 * 231.34932 * 8 7 6 11 11 O 1.42100 * 104.27305 * 359.20776 * 8 7 6 12 12 C 1.40729 * 119.92749 * 0.53503 * 7 6 5 13 13 C 1.41151 * 120.29446 * 179.74013 * 12 7 6 14 14 H 1.07998 * 119.99901 * 319.91705 * 13 12 7 15 15 C 1.39934 * 120.00065 * 139.90789 * 13 12 7 16 16 N 1.30865 * 119.99891 * 340.92646 * 15 13 12 17 17 Si 1.86802 * 119.99859 * 161.20951 * 15 13 12 18 18 H 1.48499 * 109.46507 * 269.72142 * 17 15 13 19 19 H 1.48494 * 109.47017 * 29.72157 * 17 15 13 20 20 H 1.48495 * 109.47079 * 149.72465 * 17 15 13 21 21 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47186 * 300.00346 * 1 2 3 23 23 H 1.09000 * 109.46877 * 59.99870 * 1 2 3 24 24 H 1.08000 * 119.97766 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.70795 * 179.97438 * 5 4 3 26 26 H 1.07997 * 119.73732 * 179.97438 * 6 5 4 27 27 H 1.09004 * 109.46549 * 59.99769 * 9 8 7 28 28 H 1.08995 * 109.47063 * 179.97438 * 9 8 7 29 29 H 1.08994 * 109.47068 * 300.00318 * 9 8 7 30 30 H 0.96998 * 119.99481 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2963 2.3731 -0.0005 5 6 1.9288 3.6030 -0.0011 6 6 3.3146 3.6848 -0.0005 7 6 4.0762 2.5521 0.0059 8 16 5.8342 2.6712 0.0135 9 6 6.3294 1.9578 1.6061 10 8 6.2467 1.8338 -1.0579 11 8 6.0907 4.0687 -0.0082 12 6 3.4558 1.2889 0.0008 13 6 4.2359 0.1126 0.0019 14 1 5.1333 0.0592 -0.5966 15 6 3.8465 -0.9844 0.7785 16 7 3.0064 -0.8201 1.7683 17 14 4.5321 -2.6820 0.4072 18 1 3.6428 -3.3741 -0.5599 19 1 5.8911 -2.5501 -0.1765 20 1 4.6071 -3.4710 1.6630 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.2175 2.3212 -0.0005 25 1 1.3395 4.5080 -0.0019 26 1 3.7942 4.6525 -0.0014 27 1 5.9914 0.9229 1.6613 28 1 7.4151 1.9903 1.6968 29 1 5.8792 2.5308 2.4166 30 1 2.7363 -1.5806 2.3064 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258345012.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:16 Heat of formation + Delta-G solvation = -105.419860 kcal Electronic energy + Delta-G solvation = -17687.357670 eV Core-core repulsion = 14767.676803 eV Total energy + Delta-G solvation = -2919.680867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45475 -37.82860 -37.75471 -36.64212 -35.54644 -32.11478 -30.76986 -30.01510 -28.05060 -27.00336 -23.17512 -22.86194 -19.84640 -19.49064 -18.34765 -17.28864 -16.90555 -16.71070 -16.60389 -16.14730 -16.08860 -15.89437 -14.54016 -14.22979 -13.94565 -13.84035 -13.65070 -13.42621 -13.08930 -12.99192 -12.86408 -12.83200 -12.43661 -12.32734 -12.08419 -11.80148 -11.71496 -11.58275 -10.91708 -10.88950 -9.72287 -8.84030 -8.62922 -6.46652 -0.38071 0.52046 1.02951 1.43284 1.50361 1.54605 2.24897 2.39144 2.69819 2.94219 3.10709 3.48735 3.71588 4.24608 4.27639 4.38541 4.46234 4.48449 4.56107 4.63764 4.72598 5.06105 5.13616 5.23863 5.32559 5.62736 5.72428 5.89997 6.16461 6.40865 6.52223 6.81952 7.20849 8.30123 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.012796 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.106205 B = 2187.695958 C = 3382.101449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.053 3.947 4 C -0.173 4.173 5 C -0.214 4.214 6 C -0.053 4.053 7 C -0.746 4.746 8 S 2.522 3.478 9 C -0.628 4.628 10 O -0.986 6.986 11 O -0.993 6.993 12 C 0.151 3.849 13 C -0.516 4.516 14 H 0.106 0.894 15 C 0.065 3.935 16 N -0.776 5.776 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.257 1.257 20 H -0.261 1.261 21 H 0.103 0.897 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.135 0.865 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 -0.444 2.618 2.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.216 6.216 3 C 0.007 3.993 4 C -0.193 4.193 5 C -0.234 4.234 6 C -0.072 4.072 7 C -0.838 4.838 8 S 2.709 3.291 9 C -0.781 4.781 10 O -0.984 6.984 11 O -0.991 6.991 12 C 0.147 3.853 13 C -0.544 4.544 14 H 0.124 0.876 15 C -0.156 4.156 16 N -0.398 5.398 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.181 1.181 20 H -0.185 1.185 21 H 0.121 0.879 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.528 -0.392 2.170 2.267 hybrid contribution -1.022 -0.808 0.371 1.354 sum -1.550 -1.200 2.540 3.209 Atomic orbital electron populations 1.23030 0.79911 1.03657 1.00523 1.86122 1.20107 1.26875 1.88545 1.19673 0.92760 0.84055 1.02817 1.21242 0.99287 0.92706 1.06046 1.20677 0.94110 0.96746 1.11842 1.20271 0.94442 0.96468 0.96046 1.29614 1.23796 0.98480 1.31873 1.03773 0.74376 0.73033 0.77939 1.29887 1.12625 1.15233 1.20312 1.93433 1.82521 1.69557 1.52850 1.93406 1.85440 1.31914 1.88323 1.16764 0.89707 0.91573 0.87249 1.20168 1.11324 0.97797 1.25064 0.87608 1.26320 0.93583 1.03188 0.92542 1.69734 1.23743 1.34805 1.11544 0.85577 0.80023 0.77502 0.79192 1.19372 1.18070 1.18520 0.87894 0.93476 0.93116 0.85413 0.85339 0.85705 0.84674 0.83123 0.84223 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.83 9.82 113.37 1.11 1.94 16 2 O -0.30 -14.01 7.46 -89.50 -0.67 -14.67 16 3 C 0.05 2.61 6.17 23.08 0.14 2.75 16 4 C -0.17 -7.51 9.04 22.34 0.20 -7.31 16 5 C -0.21 -8.98 10.04 22.43 0.23 -8.76 16 6 C -0.05 -2.36 9.44 22.00 0.21 -2.16 16 7 C -0.75 -35.37 5.60 22.47 0.13 -35.24 16 8 S 2.52 104.68 5.27 -56.49 -0.30 104.38 16 9 C -0.63 -20.16 10.59 113.37 1.20 -18.96 16 10 O -0.99 -47.04 15.72 -127.65 -2.01 -49.04 16 11 O -0.99 -43.10 16.71 -127.65 -2.13 -45.23 16 12 C 0.15 7.75 5.35 -21.20 -0.11 7.63 16 13 C -0.52 -26.06 6.39 23.40 0.15 -25.91 16 14 H 0.11 5.44 5.87 -2.91 -0.02 5.43 16 15 C 0.07 3.05 4.44 85.25 0.38 3.43 16 16 N -0.78 -36.67 11.26 21.83 0.25 -36.42 16 17 Si 0.96 36.58 29.60 68.60 2.03 38.61 16 18 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 21 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 22 H 0.05 1.52 7.67 -2.39 -0.02 1.50 16 23 H 0.05 1.55 7.67 -2.39 -0.02 1.53 16 24 H 0.13 4.68 6.31 -2.91 -0.02 4.66 16 25 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.13 5.12 7.16 -2.91 -0.02 5.10 16 27 H 0.13 4.78 6.74 -2.39 -0.02 4.76 16 28 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.29 12.50 8.30 -92.71 -0.77 11.73 16 Total: -1.00 -64.52 266.39 1.96 -62.55 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.16 Total: 22.41 kcal Atomic # 6 Polarization: -86.22 SS G_CDS: 3.63 Total: -82.59 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.25 Total: -36.42 kcal Atomic # 8 Polarization: -104.14 SS G_CDS: -4.81 Total: -108.95 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 16 Polarization: 104.68 SS G_CDS: -0.30 Total: 104.38 kcal Total: -64.52 1.96 -62.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258345012.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.866 kcal (2) G-P(sol) polarization free energy of solvation -64.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds