Wall clock time and date at job start Mon Mar 30 2020 04:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46553 * 2 1 4 4 C 1.50697 * 109.47403 * 120.00270 * 2 1 3 5 5 H 1.07994 * 120.00195 * 119.99974 * 4 2 1 6 6 C 1.37886 * 119.99799 * 300.00101 * 4 2 1 7 7 N 1.31510 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47323 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47338 * 120.00010 * 8 6 4 11 11 H 1.48495 * 109.47149 * 239.99917 * 8 6 4 12 12 C 1.50703 * 109.47163 * 240.00278 * 2 1 3 13 13 C 1.34252 * 125.98886 * 324.97496 * 12 2 1 14 14 N 1.38734 * 107.29364 * 179.77790 * 13 12 2 15 15 C 1.34696 * 105.71574 * 0.83013 * 14 13 12 16 16 N 1.30277 * 109.95795 * 358.83406 * 15 14 13 17 17 S 1.77762 * 107.59654 * 178.90904 * 15 14 13 18 18 O 1.42104 * 105.64433 * 231.20549 * 17 15 14 19 19 O 1.42090 * 105.68369 * 100.59130 * 17 15 14 20 20 C 1.83723 * 96.50261 * 345.89247 * 17 15 14 21 21 C 1.46641 * 136.59546 * 181.04703 * 14 13 12 22 22 H 1.08999 * 109.47451 * 300.00017 * 1 2 3 23 23 H 1.08999 * 109.47342 * 59.99987 * 1 2 3 24 24 H 1.09009 * 109.47061 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99966 * 180.02562 * 7 6 4 26 26 H 1.08001 * 126.31834 * 359.77512 * 13 12 2 27 27 H 1.09006 * 111.31172 * 265.33122 * 20 17 15 28 28 H 1.09000 * 111.31160 * 140.67893 * 20 17 15 29 29 H 1.09002 * 109.16765 * 79.59286 * 21 14 13 30 30 H 1.09003 * 109.16447 * 320.35023 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5867 4.8164 12 6 2.0323 -0.7104 -1.2305 13 6 1.4566 -1.7704 -1.8198 14 7 2.2352 -2.1050 -2.9182 15 6 3.2590 -1.2297 -2.9199 16 7 3.1317 -0.3946 -1.9281 17 16 4.3101 -1.6348 -4.2951 18 8 5.6223 -1.7327 -3.7586 19 8 3.9810 -0.7043 -5.3173 20 6 3.5882 -3.2912 -4.6278 21 6 2.1946 -3.1081 -3.9871 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7087 1.1612 3.4844 26 1 0.5547 -2.2696 -1.4978 27 1 4.1539 -4.0775 -4.1279 28 1 3.5103 -3.4816 -5.6982 29 1 1.4882 -2.7870 -4.7526 30 1 1.8638 -4.0601 -3.5719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259499938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:42 Heat of formation + Delta-G solvation = 11.322039 kcal Electronic energy + Delta-G solvation = -16976.625180 eV Core-core repulsion = 14094.299372 eV Total energy + Delta-G solvation = -2882.325808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.85515 -37.36477 -36.25625 -35.86715 -33.97765 -31.02626 -30.40206 -27.82074 -25.21849 -24.79173 -22.51211 -21.36011 -19.15884 -19.07288 -17.37898 -16.85464 -16.42032 -15.95660 -15.47426 -15.19960 -14.60623 -14.28236 -13.85944 -13.48617 -12.91330 -12.55936 -12.37647 -12.31827 -12.23282 -11.74116 -11.41701 -11.06855 -10.92535 -10.79544 -10.38556 -10.18890 -9.88917 -9.49281 -9.38721 -9.01819 -8.36310 -7.99538 -6.00052 -4.05929 -0.37129 1.90288 2.34114 2.49817 3.18733 3.30567 3.38213 3.41778 3.51722 3.68177 3.91681 4.45983 4.60355 4.66945 4.86329 4.95220 5.09650 5.31963 5.83074 5.90971 6.36537 6.77763 6.87306 7.00255 7.17982 7.39055 7.69069 7.85810 8.07731 8.37111 8.46010 8.95327 9.57994 11.06160 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.005795 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.528408 B = 4830.389814 C = 5013.963946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.112 3.888 3 H 0.047 0.953 4 C -0.503 4.503 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.062 3.938 13 C -0.003 4.003 14 N -0.482 5.482 15 C -0.327 4.327 16 N -0.370 5.370 17 S 2.508 3.492 18 O -0.906 6.906 19 O -0.909 6.909 20 C -0.587 4.587 21 C 0.098 3.902 22 H 0.090 0.910 23 H 0.011 0.989 24 H 0.027 0.973 25 H 0.261 0.739 26 H 0.180 0.820 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.107 0.893 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -10.882 -15.118 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.092 3.908 3 H 0.065 0.935 4 C -0.542 4.542 5 H 0.074 0.926 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.069 4.069 13 C -0.133 4.133 14 N -0.174 5.174 15 C -0.666 4.666 16 N -0.091 5.091 17 S 2.681 3.319 18 O -0.902 6.902 19 O -0.905 6.905 20 C -0.717 4.717 21 C -0.025 4.025 22 H 0.109 0.891 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.175 0.825 28 H 0.182 0.818 29 H 0.125 0.875 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.920 -9.744 -15.303 18.243 hybrid contribution -1.092 -1.695 1.224 2.358 sum 0.828 -11.439 -14.079 18.159 Atomic orbital electron populations 1.21818 0.97383 0.99135 1.00782 1.17340 0.92219 0.95710 0.85526 0.93468 1.21042 1.31081 1.12349 0.89693 0.92636 1.24923 0.95073 0.95020 0.98884 1.69884 1.36764 1.22839 1.23400 0.86480 0.78578 0.79712 0.82910 1.19871 1.20885 1.21046 1.22059 0.91225 0.95474 0.98141 1.22932 1.00144 1.01622 0.88648 1.46621 1.22221 1.25935 1.22666 1.36448 1.09460 1.01194 1.19527 1.69704 1.17139 1.21119 1.01107 1.05909 0.74265 0.77753 0.74018 1.93643 1.32795 1.86024 1.77727 1.93662 1.84319 1.57308 1.55198 1.30716 1.06662 1.23005 1.11289 1.21777 0.96295 0.94510 0.89909 0.89113 0.96992 0.95402 0.92916 0.80279 0.82543 0.81787 0.87516 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.55 37.16 0.32 -2.81 16 2 C 0.11 2.91 2.75 -92.93 -0.26 2.65 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.08 8.55 -34.44 -0.29 -14.37 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.35 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.06 1.46 5.94 -83.06 -0.49 0.96 16 13 C 0.00 -0.05 11.14 -15.83 -0.18 -0.23 16 14 N -0.48 -7.42 3.38 -115.84 -0.39 -7.81 16 15 C -0.33 -6.04 8.68 -90.88 -0.79 -6.83 16 16 N -0.37 -8.73 11.25 -9.91 -0.11 -8.84 16 17 S 2.51 32.00 6.21 -107.50 -0.67 31.33 16 18 O -0.91 -14.50 18.02 -57.37 -1.03 -15.53 16 19 O -0.91 -13.61 18.02 -57.37 -1.03 -14.64 16 20 C -0.59 -3.50 7.76 37.93 0.29 -3.20 16 21 C 0.10 0.82 7.34 -3.19 -0.02 0.79 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.03 0.59 7.27 -51.92 -0.38 0.21 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.18 2.85 7.35 -52.49 -0.39 2.47 16 27 H 0.16 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.16 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -37.73 270.67 -8.22 -45.95 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: -3.16 Total: -4.89 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.52 Total: -21.41 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.12 Total: -41.38 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -2.07 Total: -30.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 32.00 SS G_CDS: -0.67 Total: 31.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -37.73 -8.22 -45.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -37.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds