Wall clock time and date at job start Mon Mar 30 2020 04:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46553 * 2 1 4 4 C 1.50697 * 109.47403 * 120.00270 * 2 1 3 5 5 H 1.07994 * 120.00195 * 119.99974 * 4 2 1 6 6 C 1.37886 * 119.99799 * 300.00101 * 4 2 1 7 7 N 1.31510 * 119.99673 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99893 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47323 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47338 * 120.00010 * 8 6 4 11 11 H 1.48495 * 109.47149 * 239.99917 * 8 6 4 12 12 C 1.50703 * 109.47163 * 240.00278 * 2 1 3 13 13 C 1.34252 * 125.98886 * 324.97496 * 12 2 1 14 14 N 1.38734 * 107.29364 * 179.77790 * 13 12 2 15 15 C 1.34696 * 105.71574 * 0.83013 * 14 13 12 16 16 N 1.30277 * 109.95795 * 358.83406 * 15 14 13 17 17 S 1.77762 * 107.59654 * 178.90904 * 15 14 13 18 18 O 1.42104 * 105.64433 * 231.20549 * 17 15 14 19 19 O 1.42090 * 105.68369 * 100.59130 * 17 15 14 20 20 C 1.83723 * 96.50261 * 345.89247 * 17 15 14 21 21 C 1.46641 * 136.59546 * 181.04703 * 14 13 12 22 22 H 1.08999 * 109.47451 * 300.00017 * 1 2 3 23 23 H 1.08999 * 109.47342 * 59.99987 * 1 2 3 24 24 H 1.09009 * 109.47061 * 179.97438 * 1 2 3 25 25 H 0.97001 * 119.99966 * 180.02562 * 7 6 4 26 26 H 1.08001 * 126.31834 * 359.77512 * 13 12 2 27 27 H 1.09006 * 111.31172 * 265.33122 * 20 17 15 28 28 H 1.09000 * 111.31160 * 140.67893 * 20 17 15 29 29 H 1.09002 * 109.16765 * 79.59286 * 21 14 13 30 30 H 1.09003 * 109.16447 * 320.35023 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2863 3.6037 10 1 3.1473 -0.1858 4.8160 11 1 1.1679 -1.5867 4.8164 12 6 2.0323 -0.7104 -1.2305 13 6 1.4566 -1.7704 -1.8198 14 7 2.2352 -2.1050 -2.9182 15 6 3.2590 -1.2297 -2.9199 16 7 3.1317 -0.3946 -1.9281 17 16 4.3101 -1.6348 -4.2951 18 8 5.6223 -1.7327 -3.7586 19 8 3.9810 -0.7043 -5.3173 20 6 3.5882 -3.2912 -4.6278 21 6 2.1946 -3.1081 -3.9871 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.7087 1.1612 3.4844 26 1 0.5547 -2.2696 -1.4978 27 1 4.1539 -4.0775 -4.1279 28 1 3.5103 -3.4816 -5.6982 29 1 1.4882 -2.7870 -4.7526 30 1 1.8638 -4.0601 -3.5719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259499938.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:42 Heat of formation + Delta-G solvation = -19.658654 kcal Electronic energy + Delta-G solvation = -16977.968604 eV Core-core repulsion = 14094.299372 eV Total energy + Delta-G solvation = -2883.669231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.21102 -38.42898 -37.39265 -37.09245 -35.71188 -32.92883 -31.55789 -29.28159 -27.26576 -25.72232 -24.23801 -22.52353 -20.83305 -20.15111 -18.43551 -18.34415 -17.80119 -17.24205 -16.84856 -16.39663 -16.22117 -15.24449 -15.07403 -14.80620 -14.47743 -14.13294 -13.50014 -13.46271 -13.32275 -13.11319 -12.95930 -12.80857 -12.68488 -12.29062 -12.15064 -11.97229 -11.67801 -11.20078 -10.98388 -10.59404 -10.47705 -9.55820 -8.11757 -6.26441 -1.26859 0.58140 1.31409 1.38845 1.41280 1.47922 1.52984 1.96139 2.36231 2.44650 2.87977 3.14747 3.23205 3.69477 3.88599 4.18504 4.35613 4.39799 4.52766 4.56321 4.84704 4.95154 5.02256 5.16127 5.52875 5.67535 5.72941 5.95748 6.08903 6.29997 6.79546 6.96672 7.41098 8.93495 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.035056 B = 0.005795 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.528408 B = 4830.389814 C = 5013.963946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.111 3.889 3 H -0.008 1.008 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.010 3.990 13 C 0.011 3.989 14 N -0.466 5.466 15 C -0.339 4.339 16 N -0.447 5.447 17 S 2.491 3.509 18 O -0.952 6.952 19 O -0.941 6.941 20 C -0.511 4.511 21 C 0.073 3.927 22 H 0.063 0.937 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.264 0.736 26 H 0.209 0.791 27 H 0.192 0.808 28 H 0.226 0.774 29 H 0.142 0.858 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -15.086 -17.148 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.011 0.989 4 C -0.559 4.559 5 H 0.061 0.939 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.194 1.194 12 C -0.121 4.121 13 C -0.122 4.122 14 N -0.155 5.155 15 C -0.676 4.676 16 N -0.168 5.168 17 S 2.666 3.334 18 O -0.948 6.948 19 O -0.938 6.938 20 C -0.647 4.647 21 C -0.047 4.047 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.226 0.774 27 H 0.209 0.791 28 H 0.243 0.757 29 H 0.160 0.840 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.106 -13.903 -17.318 22.236 hybrid contribution -0.818 -0.497 1.671 1.926 sum 0.288 -14.400 -15.647 21.267 Atomic orbital electron populations 1.21593 0.95680 1.00207 1.00041 1.17095 0.93622 0.92989 0.87137 0.98947 1.21252 1.31238 1.12279 0.91146 0.93853 1.25721 0.95164 0.95714 1.01746 1.70015 1.37457 1.23885 1.24186 0.85476 0.78359 0.78455 0.79159 1.19689 1.20868 1.19409 1.21688 0.93209 0.98299 0.98921 1.22994 1.00394 1.00008 0.88825 1.46972 1.19997 1.26082 1.22472 1.37510 1.11047 1.00149 1.18897 1.69510 1.18713 1.24554 1.04000 1.06752 0.73443 0.81098 0.72107 1.93581 1.35375 1.87831 1.78005 1.93609 1.84226 1.61586 1.54349 1.30689 1.03502 1.15099 1.15429 1.22640 0.98343 0.94611 0.89089 0.91817 0.95564 0.93210 0.92668 0.77414 0.79080 0.75668 0.83983 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.55 71.98 0.62 -5.07 16 2 C 0.11 6.16 2.75 -12.29 -0.03 6.12 16 3 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 4 C -0.52 -30.45 8.55 25.60 0.22 -30.23 16 5 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.01 0.47 5.94 41.32 0.25 0.71 16 13 C 0.01 0.40 11.14 82.69 0.92 1.32 16 14 N -0.47 -12.98 3.38 -520.39 -1.76 -14.74 16 15 C -0.34 -12.52 8.68 180.44 1.57 -10.96 16 16 N -0.45 -22.33 11.25 -185.25 -2.08 -24.41 16 17 S 2.49 59.33 6.21 -56.49 -0.35 58.98 16 18 O -0.95 -30.53 18.02 -127.81 -2.30 -32.83 16 19 O -0.94 -27.45 18.02 -127.81 -2.30 -29.76 16 20 C -0.51 -2.31 7.76 72.48 0.56 -1.74 16 21 C 0.07 0.71 7.34 86.85 0.64 1.34 16 22 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 2.13 7.27 -2.38 -0.02 2.11 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.21 6.05 7.35 -2.91 -0.02 6.02 16 27 H 0.19 -0.08 8.14 -2.38 -0.02 -0.10 16 28 H 0.23 -1.41 8.14 -2.39 -0.02 -1.43 16 29 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -94.00 270.67 -0.19 -94.19 By element: Atomic # 1 Polarization: -8.45 SS G_CDS: 1.16 Total: -7.29 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 5.18 Total: -37.18 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.60 Total: -93.05 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -4.61 Total: -62.59 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 59.33 SS G_CDS: -0.35 Total: 58.98 kcal Total: -94.00 -0.19 -94.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259499938.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.530 kcal (2) G-P(sol) polarization free energy of solvation -93.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds