Wall clock time and date at job start Mon Mar 30 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 N 1.34818 * 126.06324 * 264.69068 * 10 9 7 12 12 H 0.96995 * 126.05983 * 0.03208 * 11 10 9 13 13 N 1.40017 * 107.88646 * 179.88590 * 11 10 9 14 14 C 1.30992 * 108.15472 * 0.45672 * 13 11 10 15 15 C 1.35756 * 126.06050 * 85.00252 * 10 9 7 16 16 C 1.50613 * 124.67109 * 359.74913 * 15 10 9 17 17 C 1.52777 * 110.69845 * 161.00105 * 16 15 10 18 18 S 1.81722 * 109.09143 * 53.13860 * 17 16 15 19 19 O 1.42098 * 108.70994 * 178.79580 * 18 17 16 20 20 O 1.42100 * 108.84769 * 47.32252 * 18 17 16 21 21 C 1.51131 * 125.06854 * 179.51264 * 14 13 11 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.08995 * 109.23110 * 281.31086 * 16 15 10 26 26 H 1.08998 * 109.23661 * 40.68635 * 16 15 10 27 27 H 1.09005 * 109.53360 * 293.26360 * 17 16 15 28 28 H 1.08990 * 109.53559 * 173.02740 * 17 16 15 29 29 H 1.08997 * 109.63639 * 281.43571 * 21 14 13 30 30 H 1.09002 * 109.63636 * 42.02846 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 7 2.6696 -4.3133 -1.0857 12 1 2.4115 -4.1422 -2.0049 13 7 3.5669 -5.2964 -0.6510 14 6 3.6524 -5.2227 0.6540 15 6 2.8225 -4.1898 1.0927 16 6 2.5977 -3.7281 2.5086 17 6 3.0199 -4.8088 3.5025 18 16 4.7257 -5.3182 3.1378 19 8 5.1195 -6.3028 4.0836 20 8 5.5256 -4.1559 2.9685 21 6 4.5088 -6.1174 1.5200 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 3.1825 -2.8262 2.6892 26 1 1.5404 -3.5038 2.6497 27 1 2.3555 -5.6681 3.4105 28 1 2.9667 -4.4124 4.5164 29 1 4.0163 -7.0810 1.6507 30 1 5.4813 -6.2610 1.0492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908712.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:43 Heat of formation + Delta-G solvation = -9.184841 kcal Electronic energy + Delta-G solvation = -17096.064101 eV Core-core repulsion = 14212.849049 eV Total energy + Delta-G solvation = -2883.215053 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.99324 -36.94162 -35.93035 -34.44358 -33.86084 -32.26409 -30.02325 -28.22229 -27.10070 -23.75916 -23.08178 -20.21478 -19.45953 -18.27960 -16.86224 -16.57295 -16.26671 -15.89669 -15.71040 -14.74600 -14.56326 -13.97451 -13.68237 -13.33643 -13.05042 -12.42421 -12.23727 -12.07320 -11.94352 -11.83983 -11.66611 -11.34857 -11.09356 -10.87152 -10.80495 -10.48542 -9.99626 -9.93226 -9.70974 -8.86735 -8.61331 -7.81612 -6.24189 -4.29704 0.09278 2.35321 2.67033 3.03204 3.22132 3.25624 3.29713 3.36407 3.72630 4.08458 4.31628 4.61402 4.80942 4.86780 5.08532 5.11589 5.22166 5.39456 5.72073 5.80466 6.06366 6.17865 6.35249 6.46208 6.98902 7.18052 7.22952 7.71584 7.76484 8.02973 8.09025 8.75283 9.36781 10.85449 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.006694 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.695826 B = 4181.893568 C = 4641.593158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.068 3.932 10 C 0.168 3.832 11 N -0.469 5.469 12 H 0.440 0.560 13 N -0.304 5.304 14 C 0.085 3.915 15 C -0.281 4.281 16 C -0.017 4.017 17 C -0.590 4.590 18 S 2.425 3.575 19 O -0.949 6.949 20 O -0.925 6.925 21 C -0.520 4.520 22 H 0.265 0.735 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -9.831 4.079 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.029 3.971 10 C 0.038 3.962 11 N -0.176 5.176 12 H 0.284 0.716 13 N -0.128 5.128 14 C -0.081 4.081 15 C -0.293 4.293 16 C -0.056 4.056 17 C -0.720 4.720 18 S 2.606 3.394 19 O -0.945 6.945 20 O -0.922 6.922 21 C -0.649 4.649 22 H 0.075 0.925 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.467 -10.243 3.544 11.723 hybrid contribution -0.703 1.176 -0.453 1.443 sum 3.764 -9.067 3.092 10.292 Atomic orbital electron populations 1.69933 1.06064 1.27341 1.49590 1.24965 0.94894 0.99421 0.94597 0.86480 0.80055 0.82650 0.78330 1.20548 1.20974 1.19397 1.20942 0.93346 0.89190 1.52392 0.91928 1.18191 0.91512 0.87707 0.99666 1.22052 0.95559 0.93181 0.85408 1.46106 1.35420 1.26801 1.09229 0.71616 1.77127 1.12770 1.11691 1.11224 1.20636 0.98383 0.96649 0.92477 1.19454 1.09233 1.04087 0.96483 1.19321 1.04396 0.95481 0.86408 1.29997 1.22904 1.10148 1.09001 1.07811 0.78748 0.75955 0.76851 1.93579 1.81327 1.61463 1.58174 1.93610 1.65337 1.47822 1.85466 1.28835 1.07412 1.09464 1.19217 0.92513 0.94822 0.92885 0.89026 0.88857 0.85078 0.84652 0.83840 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -13.31 9.09 -34.44 -0.31 -13.62 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.07 1.54 5.22 -29.03 -0.15 1.38 16 10 C 0.17 3.35 6.40 -82.17 -0.53 2.82 16 11 N -0.47 -8.51 7.35 33.53 0.25 -8.26 16 12 H 0.44 6.78 8.96 -182.67 -1.64 5.14 16 13 N -0.30 -5.55 12.71 33.74 0.43 -5.13 16 14 C 0.09 1.45 6.94 -82.24 -0.57 0.87 16 15 C -0.28 -5.11 5.81 -105.06 -0.61 -5.72 16 16 C -0.02 -0.27 5.41 -28.04 -0.15 -0.42 16 17 C -0.59 -6.76 6.34 37.04 0.23 -6.53 16 18 S 2.43 31.46 5.32 -107.50 -0.57 30.89 16 19 O -0.95 -13.79 18.11 -57.81 -1.05 -14.84 16 20 O -0.93 -15.87 17.83 -57.81 -1.03 -16.90 16 21 C -0.52 -6.48 6.75 36.22 0.24 -6.24 16 22 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 1.23 7.40 -51.93 -0.38 0.85 16 25 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 26 H 0.09 1.43 7.45 -51.93 -0.39 1.05 16 27 H 0.13 1.17 8.14 -51.92 -0.42 0.75 16 28 H 0.14 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.14 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 271.57 15.07 4.09 4.09 Total: -1.00 -33.23 271.57 -8.59 -41.82 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.48 Total: 2.24 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.94 Total: -25.87 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 1.41 Total: -36.88 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -2.08 Total: -31.74 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 31.46 SS G_CDS: -0.57 Total: 30.89 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -33.23 -8.59 -41.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908712.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.639 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds