Wall clock time and date at job start Mon Mar 30 2020 04:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47229 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.46876 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46859 * 150.00112 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 N 1.34818 * 126.06324 * 264.69068 * 10 9 7 12 12 H 0.96995 * 126.05983 * 0.03208 * 11 10 9 13 13 N 1.40017 * 107.88646 * 179.88590 * 11 10 9 14 14 C 1.30992 * 108.15472 * 0.45672 * 13 11 10 15 15 C 1.35756 * 126.06050 * 85.00252 * 10 9 7 16 16 C 1.50613 * 124.67109 * 359.74913 * 15 10 9 17 17 C 1.52777 * 110.69845 * 161.00105 * 16 15 10 18 18 S 1.81722 * 109.09143 * 53.13860 * 17 16 15 19 19 O 1.42098 * 108.70994 * 178.79580 * 18 17 16 20 20 O 1.42100 * 108.84769 * 47.32252 * 18 17 16 21 21 C 1.51131 * 125.06854 * 179.51264 * 14 13 11 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.08995 * 109.23110 * 281.31086 * 16 15 10 26 26 H 1.08998 * 109.23661 * 40.68635 * 16 15 10 27 27 H 1.09005 * 109.53360 * 293.26360 * 17 16 15 28 28 H 1.08990 * 109.53559 * 173.02740 * 17 16 15 29 29 H 1.08997 * 109.63639 * 281.43571 * 21 14 13 30 30 H 1.09002 * 109.63636 * 42.02846 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6446 -0.0005 11 7 2.6696 -4.3133 -1.0857 12 1 2.4115 -4.1422 -2.0049 13 7 3.5669 -5.2964 -0.6510 14 6 3.6524 -5.2227 0.6540 15 6 2.8225 -4.1898 1.0927 16 6 2.5977 -3.7281 2.5086 17 6 3.0199 -4.8088 3.5025 18 16 4.7257 -5.3182 3.1378 19 8 5.1195 -6.3028 4.0836 20 8 5.5256 -4.1559 2.9685 21 6 4.5088 -6.1174 1.5200 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 3.1825 -2.8262 2.6892 26 1 1.5404 -3.5038 2.6497 27 1 2.3555 -5.6681 3.4105 28 1 2.9667 -4.4124 4.5164 29 1 4.0163 -7.0810 1.6507 30 1 5.4813 -6.2610 1.0492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908712.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:42 Heat of formation + Delta-G solvation = -34.537701 kcal Electronic energy + Delta-G solvation = -17097.163484 eV Core-core repulsion = 14212.849049 eV Total energy + Delta-G solvation = -2884.314435 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40374 -38.07256 -37.07469 -35.67938 -35.64267 -33.80511 -31.50530 -29.43798 -28.72955 -25.38895 -24.52143 -21.55899 -20.79982 -19.41136 -18.61106 -18.14737 -17.38944 -17.11904 -16.82641 -16.46539 -15.98046 -15.17352 -14.93857 -14.63434 -14.47152 -14.00958 -13.62436 -13.51771 -13.21633 -13.09263 -13.05221 -12.75752 -12.64021 -12.50643 -12.20899 -11.90438 -11.69966 -11.61890 -11.11123 -10.62209 -10.28698 -9.28648 -8.24522 -6.35830 -0.93463 0.90924 1.40413 1.43337 1.53056 1.60932 1.67841 1.95346 2.40963 2.69390 2.99512 3.09400 3.43451 3.71135 3.92121 4.06129 4.11206 4.32688 4.48022 4.57718 4.65861 4.92204 4.99800 5.15770 5.28974 5.52168 5.67779 5.69712 6.03982 6.38673 6.67014 6.73904 7.33612 8.84521 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.006694 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.695826 B = 4181.893568 C = 4641.593158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.079 3.921 10 C 0.141 3.859 11 N -0.468 5.468 12 H 0.447 0.553 13 N -0.313 5.313 14 C 0.085 3.915 15 C -0.283 4.283 16 C -0.024 4.024 17 C -0.577 4.577 18 S 2.442 3.558 19 O -0.961 6.961 20 O -0.973 6.973 21 C -0.517 4.517 22 H 0.268 0.732 23 H 0.021 0.979 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -10.940 4.869 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.179 4.179 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.041 3.959 10 C 0.011 3.989 11 N -0.176 5.176 12 H 0.293 0.707 13 N -0.137 5.137 14 C -0.082 4.082 15 C -0.295 4.295 16 C -0.063 4.063 17 C -0.708 4.708 18 S 2.627 3.373 19 O -0.958 6.958 20 O -0.970 6.970 21 C -0.646 4.646 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.201 0.799 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.916 -11.353 4.329 13.107 hybrid contribution -0.852 1.460 -0.714 1.835 sum 4.064 -9.893 3.615 11.289 Atomic orbital electron populations 1.70011 1.07161 1.28142 1.50566 1.25650 0.95597 1.02292 0.94400 0.85615 0.78789 0.79329 0.78419 1.20042 1.20297 1.19565 1.21167 0.92959 0.90791 1.51898 0.93113 1.17861 0.91649 0.87962 0.98473 1.21735 0.96614 0.93646 0.86914 1.46128 1.35407 1.26692 1.09398 0.70732 1.77109 1.12778 1.11756 1.12080 1.21183 0.98062 0.96603 0.92376 1.19836 1.08564 1.03879 0.97186 1.19351 1.04276 0.96377 0.86296 1.29920 1.21582 1.10144 1.09176 1.07161 0.78874 0.74761 0.76552 1.93563 1.82051 1.61543 1.58681 1.93554 1.67527 1.49786 1.86176 1.28945 1.07894 1.10266 1.17504 0.92318 0.96120 0.93873 0.90806 0.88775 0.81612 0.81875 0.79851 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.44 13.29 21.45 0.28 -50.16 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -27.54 9.09 25.60 0.23 -27.31 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.08 3.67 5.22 29.10 0.15 3.82 16 10 C 0.14 5.63 6.40 41.53 0.27 5.89 16 11 N -0.47 -16.86 7.35 -47.82 -0.35 -17.21 16 12 H 0.45 13.86 8.96 -213.38 -1.91 11.94 16 13 N -0.31 -10.97 12.71 -47.15 -0.60 -11.57 16 14 C 0.08 2.70 6.94 43.14 0.30 3.00 16 15 C -0.28 -10.01 5.81 -20.15 -0.12 -10.13 16 16 C -0.02 -0.72 5.41 29.75 0.16 -0.56 16 17 C -0.58 -11.41 6.34 71.91 0.46 -10.96 16 18 S 2.44 57.49 5.32 -56.49 -0.30 57.19 16 19 O -0.96 -25.26 18.11 -127.39 -2.31 -27.57 16 20 O -0.97 -32.54 17.83 -127.39 -2.27 -34.81 16 21 C -0.52 -11.19 6.75 71.37 0.48 -10.71 16 22 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.04 2.06 7.40 -2.39 -0.02 2.04 16 25 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 26 H 0.09 2.81 7.45 -2.39 -0.02 2.79 16 27 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.16 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.18 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -71.07 271.57 -1.86 -72.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.74 Total: 12.55 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 2.39 Total: -45.41 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -0.67 Total: -78.94 kcal Atomic # 8 Polarization: -57.80 SS G_CDS: -4.58 Total: -62.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 57.49 SS G_CDS: -0.30 Total: 57.19 kcal Total: -71.07 -1.86 -72.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908712.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.393 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds