Wall clock time and date at job start Mon Mar 30 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38180 * 120.00304 * 99.72316 * 12 9 7 14 14 C 1.38209 * 120.08002 * 179.74358 * 13 12 9 15 15 N 1.48023 * 119.95328 * 180.25465 * 14 13 12 16 16 O 1.21795 * 120.00614 * 0.25803 * 15 14 13 17 17 O 1.21801 * 119.99551 * 180.25239 * 15 14 13 18 18 C 1.38512 * 120.08525 * 0.51344 * 14 13 12 19 19 F 1.35098 * 119.99707 * 179.74220 * 18 14 13 20 20 C 1.38343 * 120.00292 * 359.76413 * 18 14 13 21 21 C 1.38708 * 119.92509 * 359.97438 * 20 18 14 22 22 O 1.35897 * 120.04483 * 179.97438 * 21 20 18 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 25 25 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 26 26 H 1.08001 * 119.95557 * 359.97438 * 13 12 9 27 27 H 1.08005 * 120.03617 * 179.97438 * 20 18 14 28 28 H 0.96696 * 114.00461 * 270.02181 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5259 -4.3010 1.1800 14 6 3.4198 -5.3551 1.1809 15 7 3.7299 -6.0601 2.4450 16 8 3.1940 -5.7142 3.4826 17 8 4.5210 -6.9861 2.4475 18 6 4.0298 -5.7493 0.0015 19 9 4.9072 -6.7765 0.0053 20 6 3.7409 -5.0907 -1.1804 21 6 2.8397 -4.0363 -1.1826 22 8 2.5546 -3.3874 -2.3421 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.1578 -3.4134 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.0548 -3.9924 2.1015 27 1 4.2166 -5.3973 -2.1003 28 1 3.1333 -2.6344 -2.5241 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260076923.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:30 Heat of formation + Delta-G solvation = -84.342632 kcal Electronic energy + Delta-G solvation = -18969.721160 eV Core-core repulsion = 15517.033845 eV Total energy + Delta-G solvation = -3452.687315 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.069 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.49832 -43.37706 -41.33203 -38.03056 -37.78567 -36.89709 -33.68488 -32.42186 -31.03838 -28.07217 -27.17878 -25.12949 -23.87559 -22.58519 -20.36862 -20.10248 -19.92002 -19.00718 -18.84750 -18.18423 -17.44352 -17.10121 -16.70008 -16.28105 -15.60288 -15.54619 -15.46929 -14.93928 -14.24425 -13.90715 -13.41659 -13.26027 -12.87918 -12.69592 -12.52226 -12.44305 -12.29841 -12.01214 -11.89151 -11.03098 -10.64547 -10.50425 -9.92823 -9.49118 -8.39344 -6.28776 -1.48684 -0.40451 0.00715 0.10202 1.60687 1.66195 1.82258 1.84277 2.32429 2.64487 2.81958 3.12358 3.29603 3.36589 3.67389 3.97528 4.09033 4.13563 4.29803 4.49988 4.77361 4.88822 5.16909 5.19081 5.80496 6.15046 6.33551 6.52052 6.57850 6.73004 6.91809 7.63630 8.98420 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.006747 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.667388 B = 4148.912330 C = 4609.386833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 1.106 2.894 4 H -0.294 1.294 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.615 4.615 8 H 0.047 0.953 9 C 0.251 3.749 10 H 0.033 0.967 11 N -0.841 5.841 12 C -0.122 4.122 13 C -0.027 4.027 14 C -0.104 4.104 15 N 0.037 4.963 16 O -0.175 6.175 17 O -0.168 6.168 18 C 0.170 3.830 19 F -0.106 7.106 20 C -0.167 4.167 21 C 0.209 3.791 22 O -0.484 6.484 23 H 0.281 0.719 24 H 0.321 0.679 25 H 0.333 0.667 26 H 0.158 0.842 27 H 0.198 0.802 28 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 -8.253 -3.498 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.207 4.207 3 Si 0.930 3.070 4 H -0.220 1.220 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.654 4.654 8 H 0.065 0.935 9 C 0.141 3.859 10 H 0.051 0.949 11 N -0.371 5.371 12 C -0.126 4.126 13 C -0.046 4.046 14 C -0.189 4.189 15 N 0.553 4.447 16 O -0.388 6.388 17 O -0.382 6.382 18 C 0.149 3.851 19 F -0.084 7.084 20 C -0.186 4.186 21 C 0.162 3.838 22 O -0.300 6.300 23 H 0.092 0.908 24 H 0.134 0.866 25 H 0.147 0.853 26 H 0.176 0.824 27 H 0.215 0.785 28 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.636 -6.054 -4.408 10.007 hybrid contribution 1.055 -2.548 0.847 2.885 sum 7.692 -8.602 -3.562 12.077 Atomic orbital electron populations 1.70674 1.07975 1.32416 1.43956 1.26792 0.96514 1.05159 0.92254 0.83064 0.74121 0.72295 0.77518 1.21997 1.20788 1.19162 1.21824 0.93265 0.91168 1.59119 0.93515 1.18049 0.87875 0.89597 0.90362 0.94949 1.59155 1.28810 1.44020 1.05124 1.21845 1.01029 0.98268 0.91419 1.20600 0.93180 0.90267 1.00563 1.21229 1.10397 1.03772 0.83506 1.43492 0.98769 0.99827 1.02626 1.94531 1.53077 1.70166 1.20986 1.94547 1.29913 1.20606 1.93160 1.17032 0.89363 0.86918 0.91830 1.91644 1.64995 1.54726 1.97022 1.21633 1.00843 0.98069 0.98059 1.18316 0.89446 0.90505 0.85550 1.84613 1.61223 1.48865 1.35266 0.90764 0.86605 0.85265 0.82445 0.78537 0.71175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 13.50 21.45 0.29 -50.91 15 2 C 0.00 -0.10 5.39 84.65 0.46 0.36 15 3 Si 1.11 45.48 29.90 68.60 2.05 47.53 15 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 15 6 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 7 C -0.62 -29.14 8.70 25.60 0.22 -28.92 15 8 H 0.05 2.16 7.74 -2.91 -0.02 2.14 15 9 C 0.25 10.56 2.12 43.42 0.09 10.65 15 10 H 0.03 1.54 7.72 -2.39 -0.02 1.53 15 11 N -0.84 -34.19 7.28 -174.95 -1.27 -35.46 15 12 C -0.12 -4.15 5.03 -19.76 -0.10 -4.25 15 13 C -0.03 -0.87 8.75 22.25 0.19 -0.67 15 14 C -0.10 -3.28 6.86 36.43 0.25 -3.03 15 15 N 0.04 1.29 4.45 -46.32 -0.21 1.08 15 16 O -0.18 -6.20 18.44 18.89 0.35 -5.85 15 17 O -0.17 -5.85 17.42 18.88 0.33 -5.52 15 18 C 0.17 4.67 7.25 22.36 0.16 4.84 15 19 F -0.11 -2.91 15.47 44.97 0.70 -2.21 15 20 C -0.17 -3.90 9.97 22.41 0.22 -3.68 15 21 C 0.21 5.97 6.67 22.50 0.15 6.12 15 22 O -0.48 -13.16 12.73 -92.39 -1.18 -14.33 15 23 H 0.28 15.83 6.39 -92.70 -0.59 15.23 15 24 H 0.32 11.42 9.06 -89.69 -0.81 10.60 15 25 H 0.33 13.05 7.28 -89.70 -0.65 12.40 15 26 H 0.16 5.09 5.79 -2.91 -0.02 5.07 15 27 H 0.20 3.13 8.06 -2.91 -0.02 3.11 15 28 H 0.42 8.69 9.06 -74.06 -0.67 8.02 15 Total: -1.00 -59.72 262.36 2.02 -57.70 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.69 Total: 26.53 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 1.65 Total: -18.57 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.19 Total: -85.29 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.50 Total: -25.70 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.70 Total: -2.21 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.05 Total: 47.53 kcal Total: -59.72 2.02 -57.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076923.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.642 kcal (2) G-P(sol) polarization free energy of solvation -59.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds