Wall clock time and date at job start Mon Mar 30 2020 04:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86795 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47235 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47092 * 240.00264 * 3 2 1 6 6 H 1.48495 * 109.47187 * 120.00527 * 3 2 1 7 7 C 1.40162 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 4.00408 * 7 2 1 9 9 C 1.39743 * 119.99948 * 183.99643 * 7 2 1 10 10 C 1.39548 * 126.20627 * 185.87849 * 9 7 2 11 11 C 1.39772 * 106.45755 * 179.85133 * 10 9 7 12 12 C 1.35659 * 107.34674 * 0.40946 * 11 10 9 13 13 C 1.50700 * 125.39163 * 179.75994 * 12 11 10 14 14 H 1.08993 * 109.64218 * 0.43114 * 13 12 11 15 15 C 1.53883 * 109.64609 * 240.00071 * 13 12 11 16 16 C 1.55048 * 106.61971 * 192.96723 * 15 13 12 17 17 S 1.83279 * 102.57113 * 42.43439 * 16 15 13 18 18 O 1.42099 * 109.35206 * 90.18395 * 17 16 15 19 19 O 1.42094 * 109.35724 * 223.38611 * 17 16 15 20 20 C 1.54161 * 109.64635 * 120.72848 * 13 12 11 21 21 O 1.34247 * 109.21764 * 359.74123 * 12 11 10 22 22 H 0.97002 * 120.00239 * 174.84886 * 1 2 3 23 23 H 1.08002 * 126.77440 * 0.02562 * 10 9 7 24 24 H 1.07999 * 126.32299 * 180.15015 * 11 10 9 25 25 H 1.08994 * 110.02976 * 312.25929 * 15 13 12 26 26 H 1.09004 * 110.02346 * 73.67662 * 15 13 12 27 27 H 1.09002 * 110.78867 * 160.70598 * 16 15 13 28 28 H 1.09008 * 110.78784 * 283.96793 * 16 15 13 29 29 H 1.09002 * 110.31618 * 266.66462 * 20 13 12 30 30 H 1.08998 * 110.32149 * 28.85664 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2770 2.7464 0.0006 5 1 3.0957 1.6964 -1.2126 6 1 3.0958 1.6963 1.2124 7 6 2.0089 -1.2139 -0.0005 8 1 1.4708 -2.1479 -0.0663 9 6 3.4037 -1.2154 0.0838 10 6 4.2347 -2.3316 -0.0210 11 6 5.5446 -1.8647 0.1198 12 6 5.4776 -0.5232 0.3096 13 6 6.6594 0.3896 0.5128 14 1 7.5812 -0.1909 0.4767 15 6 6.5428 1.0910 1.8775 16 6 7.5855 2.2385 1.8769 17 16 7.3962 2.9486 0.1979 18 8 6.4195 3.9803 0.2304 19 8 8.6808 3.2044 -0.3529 20 6 6.6820 1.4625 -0.5940 21 8 4.1920 -0.1374 0.2874 22 1 -0.4850 -0.8366 -0.0754 23 1 3.9266 -3.3541 -0.1823 24 1 6.4436 -2.4623 0.0879 25 1 5.5396 1.4982 2.0035 26 1 6.7635 0.3864 2.6794 27 1 7.3458 2.9794 2.6396 28 1 8.5921 1.8467 2.0233 29 1 7.3096 1.1371 -1.4237 30 1 5.6699 1.6685 -0.9422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:47 Heat of formation + Delta-G solvation = -83.773932 kcal Electronic energy + Delta-G solvation = -17265.937028 eV Core-core repulsion = 14347.194798 eV Total energy + Delta-G solvation = -2918.742230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.93539 -36.97632 -36.49394 -35.88440 -33.84284 -31.60651 -30.44911 -28.95401 -25.87180 -23.67577 -21.26337 -20.47606 -19.34441 -18.78092 -18.29191 -16.73148 -16.66764 -15.61212 -15.36734 -14.68344 -14.24450 -14.06033 -13.94071 -13.81660 -12.79977 -12.65591 -12.15655 -12.12563 -11.95752 -11.92535 -11.82217 -11.41199 -11.20850 -11.02582 -10.90309 -10.49392 -10.12837 -10.04516 -9.67188 -9.49482 -8.59029 -7.59547 -7.41046 -4.67261 0.11468 2.53878 2.83635 3.19281 3.32483 3.41462 3.64668 3.85774 3.97093 4.04073 4.36414 4.62782 4.71445 4.84297 4.91510 5.00248 5.08925 5.46391 5.61524 5.74930 6.07383 6.09692 6.13444 6.17604 6.80079 7.13288 7.25306 7.34675 7.72156 7.90769 8.21551 8.36429 8.78752 9.85138 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.008240 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.402795 B = 3397.087956 C = 4088.109015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.042 3.958 3 Si 1.066 2.934 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.191 3.809 10 C -0.392 4.392 11 C -0.128 4.128 12 C -0.164 4.164 13 C 0.030 3.970 14 H 0.103 0.897 15 C -0.120 4.120 16 C -0.587 4.587 17 S 2.376 3.624 18 O -0.938 6.938 19 O -0.948 6.948 20 C -0.587 4.587 21 O -0.206 6.206 22 H 0.288 0.712 23 H 0.115 0.885 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 3.015 2.677 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.892 3.108 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.117 0.883 9 C 0.140 3.860 10 C -0.412 4.412 11 C -0.147 4.147 12 C -0.210 4.210 13 C 0.010 3.990 14 H 0.121 0.879 15 C -0.159 4.159 16 C -0.717 4.717 17 S 2.561 3.439 18 O -0.935 6.935 19 O -0.945 6.945 20 C -0.717 4.717 21 O -0.108 6.108 22 H 0.099 0.901 23 H 0.133 0.867 24 H 0.135 0.865 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.764 5.820 2.408 13.344 hybrid contribution -0.130 -2.973 0.146 2.980 sum 11.634 2.847 2.554 12.246 Atomic orbital electron populations 1.70571 1.07717 1.33066 1.31522 1.27380 0.95903 1.04710 0.89858 0.83475 0.74610 0.72595 0.80116 1.20724 1.19479 1.18468 1.19842 0.87913 0.96996 1.47114 0.88265 1.19845 0.90905 0.83088 0.92188 1.21205 0.91864 0.98043 1.30122 1.20843 0.97248 0.93231 1.03395 1.20684 0.82756 0.93025 1.24577 1.19621 0.95832 0.93287 0.90249 0.87853 1.22436 0.98628 0.96014 0.98805 1.30614 1.08196 1.10491 1.22383 1.09349 0.75868 0.78572 0.80140 1.93619 1.61025 1.52989 1.85883 1.93580 1.39524 1.84672 1.76718 1.30686 1.14497 1.16678 1.09828 1.83777 1.16058 1.35651 1.75331 0.90074 0.86708 0.86486 0.88902 0.88184 0.84625 0.84587 0.84214 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.25 13.65 55.56 0.76 -20.49 16 2 C 0.04 1.11 5.52 -17.27 -0.10 1.02 16 3 Si 1.07 24.77 25.96 -169.99 -4.41 20.35 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.75 6.78 56.52 0.38 -5.37 16 7 C -0.49 -13.07 9.76 -38.30 -0.37 -13.44 16 8 H 0.10 2.67 8.05 -52.49 -0.42 2.25 16 9 C 0.19 4.90 6.50 -38.53 -0.25 4.65 16 10 C -0.39 -9.37 10.95 -38.52 -0.42 -9.79 16 11 C -0.13 -2.65 10.72 -39.93 -0.43 -3.08 16 12 C -0.16 -3.32 5.72 -35.23 -0.20 -3.52 16 13 C 0.03 0.43 3.01 -90.70 -0.27 0.16 16 14 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 15 C -0.12 -1.55 5.79 -25.19 -0.15 -1.70 16 16 C -0.59 -5.86 7.31 38.24 0.28 -5.58 16 17 S 2.38 31.02 6.11 -107.50 -0.66 30.36 16 18 O -0.94 -15.82 18.15 -57.71 -1.05 -16.86 16 19 O -0.95 -14.28 18.14 -57.71 -1.05 -15.33 16 20 C -0.59 -8.11 6.74 37.76 0.25 -7.86 16 21 O -0.21 -4.90 5.94 3.65 0.02 -4.88 16 22 H 0.29 7.27 8.73 -40.82 -0.36 6.92 16 23 H 0.11 2.64 8.06 -52.49 -0.42 2.22 16 24 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 25 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.14 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.14 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.14 2.26 7.76 -51.93 -0.40 1.86 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -31.79 270.40 -7.34 -39.13 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.37 Total: 2.78 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: -1.66 Total: -39.14 kcal Atomic # 7 Polarization: -21.25 SS G_CDS: 0.76 Total: -20.49 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -2.07 Total: -37.07 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.41 Total: 20.35 kcal Atomic # 16 Polarization: 31.02 SS G_CDS: -0.66 Total: 30.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.79 -7.34 -39.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.641 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds