Wall clock time and date at job start Mon Mar 30 2020 04:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30806 * 1 3 3 Si 1.86795 * 119.99881 * 2 1 4 4 H 1.48502 * 109.47235 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47092 * 240.00264 * 3 2 1 6 6 H 1.48495 * 109.47187 * 120.00527 * 3 2 1 7 7 C 1.40162 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99866 * 4.00408 * 7 2 1 9 9 C 1.39743 * 119.99948 * 183.99643 * 7 2 1 10 10 C 1.39548 * 126.20627 * 185.87849 * 9 7 2 11 11 C 1.39772 * 106.45755 * 179.85133 * 10 9 7 12 12 C 1.35659 * 107.34674 * 0.40946 * 11 10 9 13 13 C 1.50700 * 125.39163 * 179.75994 * 12 11 10 14 14 H 1.08993 * 109.64218 * 0.43114 * 13 12 11 15 15 C 1.53883 * 109.64609 * 240.00071 * 13 12 11 16 16 C 1.55048 * 106.61971 * 192.96723 * 15 13 12 17 17 S 1.83279 * 102.57113 * 42.43439 * 16 15 13 18 18 O 1.42099 * 109.35206 * 90.18395 * 17 16 15 19 19 O 1.42094 * 109.35724 * 223.38611 * 17 16 15 20 20 C 1.54161 * 109.64635 * 120.72848 * 13 12 11 21 21 O 1.34247 * 109.21764 * 359.74123 * 12 11 10 22 22 H 0.97002 * 120.00239 * 174.84886 * 1 2 3 23 23 H 1.08002 * 126.77440 * 0.02562 * 10 9 7 24 24 H 1.07999 * 126.32299 * 180.15015 * 11 10 9 25 25 H 1.08994 * 110.02976 * 312.25929 * 15 13 12 26 26 H 1.09004 * 110.02346 * 73.67662 * 15 13 12 27 27 H 1.09002 * 110.78867 * 160.70598 * 16 15 13 28 28 H 1.09008 * 110.78784 * 283.96793 * 16 15 13 29 29 H 1.09002 * 110.31618 * 266.66462 * 20 13 12 30 30 H 1.08998 * 110.32149 * 28.85664 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 1.2770 2.7464 0.0006 5 1 3.0957 1.6964 -1.2126 6 1 3.0958 1.6963 1.2124 7 6 2.0089 -1.2139 -0.0005 8 1 1.4708 -2.1479 -0.0663 9 6 3.4037 -1.2154 0.0838 10 6 4.2347 -2.3316 -0.0210 11 6 5.5446 -1.8647 0.1198 12 6 5.4776 -0.5232 0.3096 13 6 6.6594 0.3896 0.5128 14 1 7.5812 -0.1909 0.4767 15 6 6.5428 1.0910 1.8775 16 6 7.5855 2.2385 1.8769 17 16 7.3962 2.9486 0.1979 18 8 6.4195 3.9803 0.2304 19 8 8.6808 3.2044 -0.3529 20 6 6.6820 1.4625 -0.5940 21 8 4.1920 -0.1374 0.2874 22 1 -0.4850 -0.8366 -0.0754 23 1 3.9266 -3.3541 -0.1823 24 1 6.4436 -2.4623 0.0879 25 1 5.5396 1.4982 2.0035 26 1 6.7635 0.3864 2.6794 27 1 7.3458 2.9794 2.6396 28 1 8.5921 1.8467 2.0233 29 1 7.3096 1.1371 -1.4237 30 1 5.6699 1.6685 -0.9422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241746.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:47 Heat of formation + Delta-G solvation = -107.115279 kcal Electronic energy + Delta-G solvation = -17266.949185 eV Core-core repulsion = 14347.194798 eV Total energy + Delta-G solvation = -2919.754386 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.74347 -38.09483 -37.64428 -37.00883 -35.76577 -33.37813 -31.79335 -30.45697 -27.27491 -25.06699 -22.65961 -22.21507 -21.04388 -20.17615 -19.81664 -17.99043 -17.69309 -16.97241 -16.60115 -16.45717 -15.90187 -15.56601 -15.19748 -14.94613 -14.65779 -13.90022 -13.59540 -13.29290 -13.21984 -13.12907 -13.06766 -12.99840 -12.80534 -12.64299 -12.00821 -11.97439 -11.65213 -11.53660 -11.36159 -11.16944 -10.36739 -9.54303 -9.31491 -6.62518 -0.89272 0.97003 1.32133 1.49059 1.57251 1.64630 2.03731 2.10055 2.63395 2.74306 2.99918 3.08019 3.53336 3.62989 3.82621 3.96239 4.10169 4.44626 4.52555 4.62979 4.75425 4.85234 5.03471 5.04029 5.15594 5.25985 5.33635 5.49266 5.82893 6.05822 6.36972 6.44471 6.91019 7.86557 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.008240 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.402795 B = 3397.087956 C = 4088.109015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.016 3.984 3 Si 1.085 2.915 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.246 1.246 7 C -0.522 4.522 8 H 0.078 0.922 9 C 0.157 3.843 10 C -0.401 4.401 11 C -0.142 4.142 12 C -0.140 4.140 13 C 0.021 3.979 14 H 0.151 0.849 15 C -0.127 4.127 16 C -0.550 4.550 17 S 2.385 3.615 18 O -0.984 6.984 19 O -0.968 6.968 20 C -0.595 4.595 21 O -0.215 6.215 22 H 0.284 0.716 23 H 0.114 0.886 24 H 0.159 0.841 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.159 0.841 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.650 3.416 3.892 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.200 4.200 3 Si 0.907 3.093 4 H -0.198 1.198 5 H -0.191 1.191 6 H -0.171 1.171 7 C -0.552 4.552 8 H 0.096 0.904 9 C 0.106 3.894 10 C -0.422 4.422 11 C -0.161 4.161 12 C -0.187 4.187 13 C 0.002 3.998 14 H 0.169 0.831 15 C -0.166 4.166 16 C -0.683 4.683 17 S 2.573 3.427 18 O -0.981 6.981 19 O -0.965 6.965 20 C -0.725 4.725 21 O -0.117 6.117 22 H 0.095 0.905 23 H 0.132 0.868 24 H 0.177 0.823 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.177 0.823 28 H 0.196 0.804 29 H 0.182 0.818 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.503 6.223 3.590 17.086 hybrid contribution -1.052 -3.194 -0.195 3.369 sum 14.451 3.028 3.395 15.150 Atomic orbital electron populations 1.70603 1.08045 1.32825 1.34114 1.28141 0.96099 1.06407 0.89334 0.83292 0.74417 0.70844 0.80777 1.19831 1.19126 1.17129 1.19762 0.89055 0.96516 1.49897 0.90372 1.19882 0.90987 0.84278 0.94301 1.21538 0.93590 0.97760 1.29266 1.21238 0.97266 0.93798 1.03762 1.21954 0.82734 0.94386 1.19608 1.20097 0.94873 0.93377 0.91503 0.83137 1.22456 0.98480 0.97352 0.98282 1.30456 1.09640 1.09364 1.18854 1.08957 0.74506 0.77722 0.81482 1.93564 1.62362 1.55107 1.87044 1.93553 1.39758 1.84950 1.78225 1.30703 1.13696 1.17247 1.10807 1.83785 1.17648 1.35488 1.74788 0.90520 0.86784 0.82335 0.91320 0.85665 0.82285 0.80412 0.81813 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.75 13.65 21.87 0.30 -45.45 16 2 C 0.02 0.88 5.52 85.31 0.47 1.35 16 3 Si 1.09 50.54 25.96 68.60 1.78 52.32 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.25 -10.78 6.78 99.48 0.67 -10.10 16 7 C -0.52 -29.19 9.76 23.10 0.23 -28.96 16 8 H 0.08 4.52 8.05 -2.91 -0.02 4.49 16 9 C 0.16 8.15 6.50 22.95 0.15 8.29 16 10 C -0.40 -18.97 10.95 22.96 0.25 -18.72 16 11 C -0.14 -5.43 10.72 22.04 0.24 -5.20 16 12 C -0.14 -5.25 5.72 25.09 0.14 -5.10 16 13 C 0.02 0.50 3.01 -10.85 -0.03 0.47 16 14 H 0.15 2.35 8.10 -2.39 -0.02 2.33 16 15 C -0.13 -2.63 5.79 31.59 0.18 -2.45 16 16 C -0.55 -7.77 7.31 72.68 0.53 -7.24 16 17 S 2.38 54.79 6.11 -56.49 -0.34 54.44 16 18 O -0.98 -31.79 18.15 -127.49 -2.31 -34.10 16 19 O -0.97 -26.02 18.14 -127.49 -2.31 -28.33 16 20 C -0.59 -14.60 6.74 72.38 0.49 -14.11 16 21 O -0.21 -10.05 5.94 -9.86 -0.06 -10.11 16 22 H 0.28 15.20 8.73 -92.71 -0.81 14.39 16 23 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 24 H 0.16 4.69 8.06 -2.91 -0.02 4.67 16 25 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 26 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.18 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.16 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.11 3.53 7.76 -2.39 -0.02 3.51 16 Total: -1.00 -72.06 270.40 0.77 -71.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.07 Total: 11.61 kcal Atomic # 6 Polarization: -74.31 SS G_CDS: 2.65 Total: -71.67 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.30 Total: -45.45 kcal Atomic # 8 Polarization: -67.86 SS G_CDS: -4.68 Total: -72.54 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.78 Total: 52.32 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -0.34 Total: 54.44 kcal Total: -72.06 0.77 -71.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241746.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.821 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds