Wall clock time and date at job start Mon Mar 30 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00118 * 2 1 4 4 C 1.50698 * 109.47117 * 270.00543 * 3 2 1 5 5 H 1.08004 * 120.00040 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00034 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99917 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47301 * 90.00139 * 8 6 4 10 10 H 1.48507 * 109.46780 * 209.99862 * 8 6 4 11 11 H 1.48500 * 109.47202 * 329.99764 * 8 6 4 12 12 C 1.38615 * 120.00073 * 180.02562 * 2 1 3 13 13 N 1.29681 * 124.95091 * 180.02562 * 12 2 1 14 14 C 1.32118 * 116.87158 * 179.97438 * 13 12 2 15 15 C 1.33333 * 114.57745 * 0.02562 * 14 13 12 16 16 C 1.50693 * 125.95304 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46773 * 90.00041 * 16 15 14 18 18 O 1.20826 * 120.00352 * 0.02562 * 17 16 15 19 19 O 1.34232 * 119.99950 * 179.97438 * 17 16 15 20 20 S 1.70966 * 124.94788 * 359.72238 * 12 2 1 21 21 H 1.09006 * 109.47159 * 269.99588 * 1 2 3 22 22 H 1.08996 * 109.47463 * 29.99424 * 1 2 3 23 23 H 1.09007 * 109.47021 * 150.00284 * 1 2 3 24 24 H 1.08995 * 109.46902 * 29.99961 * 3 2 1 25 25 H 1.08993 * 109.47128 * 150.00226 * 3 2 1 26 26 H 0.97003 * 119.99676 * 179.97438 * 7 6 4 27 27 H 1.07992 * 122.71404 * 179.97438 * 14 13 12 28 28 H 1.09003 * 109.47158 * 209.99910 * 16 15 14 29 29 H 1.09001 * 109.47521 * 330.00358 * 16 15 14 30 30 H 0.96697 * 117.00141 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5524 3.6186 -0.6731 8 14 3.4377 3.4169 -3.4339 9 1 2.3076 4.2592 -3.9013 10 1 4.6977 4.2005 -3.4961 11 1 3.5559 2.2196 -4.3044 12 6 2.1581 -1.2004 -0.0005 13 7 3.4500 -1.3123 -0.0001 14 6 3.9433 -2.5380 -0.0002 15 6 3.0255 -3.5051 -0.0013 16 6 3.3013 -4.9866 -0.0022 17 6 3.3926 -5.4814 1.4183 18 8 3.2480 -4.7102 2.3372 19 8 3.6335 -6.7791 1.6629 20 16 1.4342 -2.7493 0.0056 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5137 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 4.0293 4.4445 -0.8504 27 1 5.0041 -2.7402 -0.0003 28 1 2.4930 -5.5064 -0.5168 29 1 4.2430 -5.1806 -0.5157 30 1 3.6829 -7.0493 2.5900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308975474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:01 Heat of formation + Delta-G solvation = -39.246928 kcal Electronic energy + Delta-G solvation = -16297.387454 eV Core-core repulsion = 13412.868812 eV Total energy + Delta-G solvation = -2884.518643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21020 -38.93042 -36.32261 -35.92482 -32.75229 -32.16097 -28.04864 -27.63326 -25.23132 -23.82423 -22.13669 -21.33212 -18.67818 -18.09362 -17.61023 -16.57852 -16.40996 -16.03472 -15.27221 -14.71285 -14.40935 -13.97404 -13.81330 -13.23392 -12.80542 -12.69757 -12.38414 -12.23232 -11.88391 -11.52053 -11.25717 -10.96512 -10.70485 -10.62094 -10.56698 -10.17331 -9.91100 -9.04728 -8.74917 -8.59263 -8.46579 -6.83023 -6.04800 -4.12471 1.51109 1.71625 2.22712 2.31646 3.09228 3.28274 3.35105 3.39329 3.69258 3.77639 4.41551 4.83562 5.13237 5.26730 5.29794 5.38681 5.55625 5.58754 5.80605 6.07123 6.17660 6.45462 6.63852 6.82064 7.35741 7.68268 7.86158 7.90281 8.00519 8.17690 8.71099 8.91462 9.52002 11.00434 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.005029 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.355906 B = 5566.067320 C = 5839.594360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.559 5.559 3 C 0.256 3.744 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.359 3.641 13 N -0.548 5.548 14 C 0.130 3.870 15 C -0.310 4.310 16 C -0.008 4.008 17 C 0.469 3.531 18 O -0.499 6.499 19 O -0.524 6.524 20 S 0.046 5.954 21 H 0.051 0.949 22 H 0.085 0.915 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.163 0.837 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -16.846 1.799 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.274 5.274 3 C 0.135 3.865 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.012 4.012 13 N -0.273 5.273 14 C -0.024 4.024 15 C -0.434 4.434 16 C -0.049 4.049 17 C 0.310 3.690 18 O -0.385 6.385 19 O -0.336 6.336 20 S 0.295 5.705 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.180 0.820 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.356 -15.934 1.702 16.606 hybrid contribution 1.196 0.120 -0.317 1.243 sum -3.160 -15.814 1.385 16.186 Atomic orbital electron populations 1.21720 0.79245 1.02993 1.01089 1.46806 1.04741 1.03149 1.72672 1.19464 0.92550 0.76763 0.97724 1.21411 1.36729 1.06266 0.92104 0.92450 1.24914 0.95274 0.96307 0.97429 1.69932 1.38305 1.14304 1.30735 0.86487 0.77691 0.78579 0.84603 1.20656 1.21061 1.19912 1.23679 0.90809 0.91142 0.95523 1.66504 1.08860 1.23620 1.28318 1.21289 1.00116 0.85572 0.95449 1.24120 0.94357 0.97496 1.27436 1.19254 1.05427 0.90351 0.89839 1.23843 0.72420 0.79281 0.93446 1.90757 1.44617 1.56369 1.46762 1.84539 1.84187 1.28767 1.36125 1.83375 1.10303 1.00206 1.76655 0.93056 0.89604 0.92474 0.94668 0.93232 0.92657 0.82004 0.87430 0.86449 0.73546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.41 59.85 0.62 2.18 16 2 N -0.56 -12.19 2.96 -185.31 -0.55 -12.74 16 3 C 0.26 6.63 5.28 -5.20 -0.03 6.60 16 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.36 7.66 7.74 -87.68 -0.68 6.98 16 13 N -0.55 -12.37 9.81 -15.21 -0.15 -12.52 16 14 C 0.13 2.37 11.24 -19.14 -0.22 2.15 16 15 C -0.31 -4.90 5.07 -36.02 -0.18 -5.08 16 16 C -0.01 -0.09 6.34 -29.04 -0.18 -0.28 16 17 C 0.47 5.72 8.32 36.01 0.30 6.02 16 18 O -0.50 -8.22 16.79 -18.75 -0.31 -8.54 16 19 O -0.52 -4.64 13.42 -39.26 -0.53 -5.17 16 20 S 0.05 0.78 21.68 -107.50 -2.33 -1.55 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 23 H 0.06 0.84 7.05 -51.92 -0.37 0.47 16 24 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 25 H 0.05 1.43 7.62 -51.93 -0.40 1.04 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.41 2.02 9.10 45.56 0.41 2.43 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -34.45 286.58 -7.04 -41.50 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -2.42 Total: -1.65 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.79 Total: 5.24 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: 0.04 Total: -50.79 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.84 Total: -13.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.33 Total: -1.55 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.45 -7.04 -41.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308975474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.249 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds