Wall clock time and date at job start Mon Mar 30 2020 04:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00118 * 2 1 4 4 C 1.50698 * 109.47117 * 270.00543 * 3 2 1 5 5 H 1.08004 * 120.00040 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00034 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99917 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99853 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47301 * 90.00139 * 8 6 4 10 10 H 1.48507 * 109.46780 * 209.99862 * 8 6 4 11 11 H 1.48500 * 109.47202 * 329.99764 * 8 6 4 12 12 C 1.38615 * 120.00073 * 180.02562 * 2 1 3 13 13 N 1.29681 * 124.95091 * 180.02562 * 12 2 1 14 14 C 1.32118 * 116.87158 * 179.97438 * 13 12 2 15 15 C 1.33333 * 114.57745 * 0.02562 * 14 13 12 16 16 C 1.50693 * 125.95304 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46773 * 90.00041 * 16 15 14 18 18 O 1.20826 * 120.00352 * 0.02562 * 17 16 15 19 19 O 1.34232 * 119.99950 * 179.97438 * 17 16 15 20 20 S 1.70966 * 124.94788 * 359.72238 * 12 2 1 21 21 H 1.09006 * 109.47159 * 269.99588 * 1 2 3 22 22 H 1.08996 * 109.47463 * 29.99424 * 1 2 3 23 23 H 1.09007 * 109.47021 * 150.00284 * 1 2 3 24 24 H 1.08995 * 109.46902 * 29.99961 * 3 2 1 25 25 H 1.08993 * 109.47128 * 150.00226 * 3 2 1 26 26 H 0.97003 * 119.99676 * 179.97438 * 7 6 4 27 27 H 1.07992 * 122.71404 * 179.97438 * 14 13 12 28 28 H 1.09003 * 109.47158 * 209.99910 * 16 15 14 29 29 H 1.09001 * 109.47521 * 330.00358 * 16 15 14 30 30 H 0.96697 * 117.00141 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0979 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5524 3.6186 -0.6731 8 14 3.4377 3.4169 -3.4339 9 1 2.3076 4.2592 -3.9013 10 1 4.6977 4.2005 -3.4961 11 1 3.5559 2.2196 -4.3044 12 6 2.1581 -1.2004 -0.0005 13 7 3.4500 -1.3123 -0.0001 14 6 3.9433 -2.5380 -0.0002 15 6 3.0255 -3.5051 -0.0013 16 6 3.3013 -4.9866 -0.0022 17 6 3.3926 -5.4814 1.4183 18 8 3.2480 -4.7102 2.3372 19 8 3.6335 -6.7791 1.6629 20 16 1.4342 -2.7493 0.0056 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5137 23 1 -0.3633 -0.8901 -0.5138 24 1 1.6084 2.0283 0.5138 25 1 3.1499 1.1383 0.5138 26 1 4.0293 4.4445 -0.8504 27 1 5.0041 -2.7402 -0.0003 28 1 2.4930 -5.5064 -0.5168 29 1 4.2430 -5.1806 -0.5157 30 1 3.6829 -7.0493 2.5900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308975474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:01 Heat of formation + Delta-G solvation = -63.510973 kcal Electronic energy + Delta-G solvation = -16298.439622 eV Core-core repulsion = 13412.868812 eV Total energy + Delta-G solvation = -2885.570811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20811 -40.36264 -37.75029 -36.97435 -34.78011 -33.39192 -29.96805 -28.95327 -26.64946 -25.64504 -23.54887 -22.51910 -20.17522 -19.07991 -18.92158 -18.63603 -17.46758 -17.23729 -16.66738 -16.42973 -15.99103 -15.43519 -15.26885 -14.52494 -14.09410 -14.03550 -13.69873 -13.64985 -13.34204 -13.18612 -12.81984 -12.55835 -12.45943 -12.17448 -11.95286 -11.83452 -11.59175 -10.68142 -10.62767 -10.25119 -9.99348 -8.47979 -8.06718 -6.35059 0.11949 0.28421 0.93112 1.31471 1.37531 1.39857 1.50436 2.05850 2.21988 2.41921 2.49167 3.09205 3.73653 3.90722 4.26017 4.28941 4.53690 4.59010 4.71020 4.76085 4.84835 4.95989 5.17208 5.34673 5.65456 5.70595 6.00297 6.10927 6.28641 6.74493 7.09291 7.27219 7.35534 8.86140 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.035781 B = 0.005029 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.355906 B = 5566.067320 C = 5839.594360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.580 5.580 3 C 0.276 3.724 4 C -0.536 4.536 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.316 3.684 13 N -0.598 5.598 14 C 0.092 3.908 15 C -0.285 4.285 16 C -0.012 4.012 17 C 0.480 3.520 18 O -0.551 6.551 19 O -0.509 6.509 20 S 0.109 5.891 21 H 0.069 0.931 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.022 0.978 25 H 0.007 0.993 26 H 0.267 0.733 27 H 0.182 0.818 28 H 0.139 0.861 29 H 0.153 0.847 30 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -19.417 0.570 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.296 5.296 3 C 0.153 3.847 4 C -0.575 4.575 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.198 1.198 12 C -0.054 4.054 13 N -0.324 5.324 14 C -0.060 4.060 15 C -0.409 4.409 16 C -0.052 4.052 17 C 0.323 3.677 18 O -0.441 6.441 19 O -0.323 6.323 20 S 0.358 5.642 21 H 0.087 0.913 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.198 0.802 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.930 -18.590 0.477 19.238 hybrid contribution 1.398 0.658 0.131 1.551 sum -3.532 -17.932 0.608 18.287 Atomic orbital electron populations 1.21897 0.76652 1.03921 1.02546 1.46620 1.06145 1.02188 1.74641 1.18824 0.90997 0.78743 0.96138 1.21636 1.36713 1.06335 0.92792 0.93170 1.25796 0.94912 0.96347 1.01732 1.70053 1.39031 1.14779 1.32956 0.85426 0.77988 0.78135 0.79290 1.19078 1.20633 1.19844 1.23941 0.91373 0.92710 0.97349 1.66456 1.10518 1.26598 1.28824 1.21600 1.01614 0.84978 0.97765 1.24791 0.93500 0.99744 1.22815 1.19531 1.08481 0.87074 0.90108 1.23832 0.71050 0.79710 0.93062 1.90768 1.47267 1.57787 1.48259 1.84482 1.83168 1.26671 1.37980 1.83011 1.09837 0.96437 1.74934 0.91276 0.89887 0.90273 0.96028 0.97445 0.92436 0.80159 0.84281 0.82957 0.71277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 10.41 127.77 1.33 4.39 16 2 N -0.58 -25.98 2.96 -740.20 -2.19 -28.17 16 3 C 0.28 15.06 5.28 85.63 0.45 15.52 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.64 5.46 84.66 0.46 1.10 16 7 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 8 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.32 13.64 7.74 179.32 1.39 15.02 16 13 N -0.60 -27.73 9.81 -202.03 -1.98 -29.71 16 14 C 0.09 3.31 11.24 83.54 0.94 4.25 16 15 C -0.28 -8.37 5.07 24.57 0.12 -8.25 16 16 C -0.01 -0.22 6.34 29.10 0.18 -0.04 16 17 C 0.48 10.16 8.32 71.24 0.59 10.76 16 18 O -0.55 -17.20 16.79 21.96 0.37 -16.84 16 19 O -0.51 -7.04 13.42 -51.44 -0.69 -7.73 16 20 S 0.11 3.46 21.68 -56.49 -1.22 2.23 16 21 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 22 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 23 H 0.08 2.21 7.05 -2.38 -0.02 2.20 16 24 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 25 H 0.01 0.46 7.62 -2.39 -0.02 0.44 16 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.18 5.46 8.06 -2.91 -0.02 5.44 16 28 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.43 2.74 9.10 -74.06 -0.67 2.06 16 Total: -1.00 -77.79 286.58 2.80 -74.99 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 0.50 Total: 1.98 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.71 Total: 12.14 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -3.89 Total: -113.70 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.32 Total: -24.56 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.22 Total: 2.23 kcal Total: -77.79 2.80 -74.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308975474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.476 kcal (2) G-P(sol) polarization free energy of solvation -77.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds