Wall clock time and date at job start Mon Mar 30 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46893 * 266.54873 * 3 2 1 5 5 C 1.36933 * 120.00131 * 87.95639 * 4 3 2 6 6 H 1.07998 * 120.00197 * 173.26712 * 5 4 3 7 7 C 1.38807 * 119.99899 * 353.54914 * 5 4 3 8 8 N 1.31618 * 120.00200 * 333.24909 * 7 5 4 9 9 Si 1.86804 * 120.00326 * 153.25187 * 7 5 4 10 10 H 1.48500 * 109.46949 * 59.99289 * 9 7 5 11 11 H 1.48498 * 109.47370 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47082 * 299.99780 * 9 7 5 13 13 S 1.65602 * 119.99718 * 267.95483 * 4 3 2 14 14 O 1.42097 * 106.40432 * 23.54079 * 13 4 3 15 15 O 1.42096 * 106.40009 * 156.46472 * 13 4 3 16 16 C 1.76203 * 107.21839 * 269.99863 * 13 4 3 17 17 N 1.30496 * 125.65654 * 269.69974 * 16 13 4 18 18 C 1.34124 * 109.25921 * 179.89350 * 17 16 13 19 19 C 1.34667 * 108.02238 * 0.36720 * 18 17 16 20 20 N 1.35046 * 125.64324 * 90.00386 * 16 13 4 21 21 H 0.97000 * 126.40539 * 359.97438 * 20 16 13 22 22 H 1.09000 * 109.46717 * 146.54990 * 3 2 1 23 23 H 1.08996 * 109.47157 * 26.55301 * 3 2 1 24 24 H 0.97002 * 120.00371 * 180.02562 * 8 7 5 25 25 H 1.07998 * 125.99146 * 180.18303 * 18 17 16 26 26 H 1.08001 * 126.59535 * 179.81423 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0963 0.0840 1.3787 5 6 3.2852 -1.0591 2.1085 6 1 3.7464 -1.0073 3.0836 7 6 2.8890 -2.2853 1.5924 8 7 1.9087 -2.3449 0.7163 9 14 3.7473 -3.8511 2.1415 10 1 3.5913 -4.0123 3.6095 11 1 3.1415 -5.0166 1.4489 12 1 5.1909 -3.7690 1.8032 13 16 3.4199 1.5608 2.0546 14 8 2.6453 2.5100 1.3346 15 8 3.3253 1.3874 3.4617 16 6 5.1076 1.9329 1.7115 17 7 6.1242 1.6222 2.4685 18 6 7.2540 2.0602 1.8937 19 6 6.9245 2.6725 0.7404 20 7 5.5629 2.5921 0.6243 21 1 5.0256 2.9431 -0.1030 22 1 2.9710 0.8583 -0.5665 23 1 2.9718 -0.9184 -0.4594 24 1 1.6316 -3.2018 0.3559 25 1 8.2528 1.9450 2.2881 26 1 7.6039 3.1372 0.0411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309140699.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:01 Heat of formation + Delta-G solvation = 35.232697 kcal Electronic energy + Delta-G solvation = -17108.928961 eV Core-core repulsion = 14124.099654 eV Total energy + Delta-G solvation = -2984.829307 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.042 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66321 -36.81287 -36.34387 -34.90828 -34.51094 -32.28869 -31.78641 -29.34099 -27.61361 -24.22705 -22.16585 -21.21790 -19.31577 -18.60754 -18.07125 -16.92213 -16.28475 -15.24271 -14.94868 -14.77145 -14.48959 -14.02935 -13.61278 -13.48073 -13.09613 -12.40763 -11.87569 -11.61272 -11.44631 -11.27541 -11.14642 -10.98577 -10.87033 -10.62022 -10.42857 -10.20728 -9.92903 -9.88249 -9.80253 -8.65138 -8.50415 -6.75095 -4.07359 1.01763 1.94232 3.10719 3.14412 3.17142 3.22179 3.29873 3.65039 3.99012 4.12479 4.32029 4.50108 4.78215 4.93447 5.21815 5.28359 5.45190 5.67832 5.79642 6.08532 6.33181 6.71691 6.85668 7.23472 7.31292 8.02405 8.12245 8.47656 8.84215 8.88300 10.27256 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.010403 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.455889 B = 2690.805048 C = 3423.090092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.259 3.741 3 C 0.230 3.770 4 N -0.809 5.809 5 C -0.286 4.286 6 H 0.128 0.872 7 C 0.047 3.953 8 N -0.836 5.836 9 Si 0.914 3.086 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.612 3.388 14 O -0.977 6.977 15 O -0.936 6.936 16 C -0.320 4.320 17 N -0.405 5.405 18 C -0.043 4.043 19 C -0.034 4.034 20 N -0.523 5.523 21 H 0.425 0.575 22 H 0.081 0.919 23 H 0.126 0.874 24 H 0.281 0.719 25 H 0.173 0.827 26 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 4.325 -5.046 11.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.060 4.060 3 C 0.101 3.899 4 N -0.638 5.638 5 C -0.426 4.426 6 H 0.145 0.855 7 C -0.163 4.163 8 N -0.475 5.475 9 Si 0.739 3.261 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.194 1.194 13 S 2.698 3.302 14 O -0.966 6.966 15 O -0.924 6.924 16 C -0.654 4.654 17 N -0.125 5.125 18 C -0.195 4.195 19 C -0.173 4.173 20 N -0.126 5.126 21 H 0.264 0.736 22 H 0.099 0.901 23 H 0.143 0.857 24 H 0.092 0.908 25 H 0.190 0.810 26 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.290 4.556 -3.908 9.443 hybrid contribution 1.664 -0.438 -1.226 2.113 sum 8.954 4.118 -5.135 11.113 Atomic orbital electron populations 1.80875 1.13439 1.12614 1.08092 1.28801 0.94883 0.89743 0.92606 1.18278 0.82619 1.03760 0.85280 1.54125 1.66044 1.23478 1.20175 1.19738 1.39159 0.83787 0.99941 0.85470 1.25245 0.94974 0.99553 0.96561 1.69954 1.20207 1.28008 1.29355 0.86177 0.80141 0.80074 0.79724 1.19152 1.20752 1.19361 1.07855 0.74207 0.73113 0.75011 1.93477 1.67600 1.61108 1.74381 1.93481 1.85142 1.85045 1.28712 1.39416 1.25469 1.08614 0.91918 1.70238 0.97119 1.17427 1.27705 1.22675 0.98390 1.03641 0.94800 1.23115 0.84805 1.07113 1.02223 1.43197 1.07467 1.42137 1.19763 0.73637 0.90083 0.85684 0.90767 0.81005 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.50 18.54 42.16 0.78 -10.72 15 2 C 0.26 5.87 13.48 -20.76 -0.28 5.60 15 3 C 0.23 4.49 5.07 -6.83 -0.03 4.46 15 4 N -0.81 -17.70 2.88 -62.78 -0.18 -17.88 15 5 C -0.29 -6.74 9.38 -15.06 -0.14 -6.88 15 6 H 0.13 3.06 7.41 -52.49 -0.39 2.67 15 7 C 0.05 1.08 4.88 -17.43 -0.09 1.00 15 8 N -0.84 -19.53 9.12 55.49 0.51 -19.03 15 9 Si 0.91 18.07 29.63 -169.99 -5.04 13.03 15 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 11 H -0.28 -5.55 7.11 56.52 0.40 -5.14 15 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 13 S 2.61 56.36 5.78 -107.50 -0.62 55.74 15 14 O -0.98 -21.15 17.05 -57.17 -0.97 -22.12 15 15 O -0.94 -23.48 16.89 -57.17 -0.97 -24.44 15 16 C -0.32 -6.08 8.15 -90.38 -0.74 -6.81 15 17 N -0.41 -8.07 11.25 -13.85 -0.16 -8.23 15 18 C -0.04 -0.66 11.87 -17.81 -0.21 -0.87 15 19 C -0.03 -0.43 12.04 -16.56 -0.20 -0.63 15 20 N -0.52 -7.61 6.15 -13.22 -0.08 -7.69 15 21 H 0.42 4.82 8.96 -40.82 -0.37 4.45 15 22 H 0.08 1.23 7.72 -51.93 -0.40 0.83 15 23 H 0.13 2.37 6.36 -51.93 -0.33 2.04 15 24 H 0.28 6.28 8.31 -40.82 -0.34 5.94 15 25 H 0.17 2.04 8.06 -52.49 -0.42 1.61 15 26 H 0.18 1.37 8.06 -52.49 -0.42 0.95 15 LS Contribution 258.35 15.07 3.89 3.89 Total: -1.00 -32.09 258.35 -5.99 -38.08 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -1.47 Total: 3.51 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.69 Total: -4.14 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: 0.87 Total: -63.55 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.94 Total: -46.56 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.03 kcal Atomic # 16 Polarization: 56.36 SS G_CDS: -0.62 Total: 55.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.09 -5.99 -38.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309140699.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.310 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds