Wall clock time and date at job start Mon Mar 30 2020 03:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46893 * 266.54873 * 3 2 1 5 5 C 1.36933 * 120.00131 * 87.95639 * 4 3 2 6 6 H 1.07998 * 120.00197 * 173.26712 * 5 4 3 7 7 C 1.38807 * 119.99899 * 353.54914 * 5 4 3 8 8 N 1.31618 * 120.00200 * 333.24909 * 7 5 4 9 9 Si 1.86804 * 120.00326 * 153.25187 * 7 5 4 10 10 H 1.48500 * 109.46949 * 59.99289 * 9 7 5 11 11 H 1.48498 * 109.47370 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47082 * 299.99780 * 9 7 5 13 13 S 1.65602 * 119.99718 * 267.95483 * 4 3 2 14 14 O 1.42097 * 106.40432 * 23.54079 * 13 4 3 15 15 O 1.42096 * 106.40009 * 156.46472 * 13 4 3 16 16 C 1.76203 * 107.21839 * 269.99863 * 13 4 3 17 17 N 1.30496 * 125.65654 * 269.69974 * 16 13 4 18 18 C 1.34124 * 109.25921 * 179.89350 * 17 16 13 19 19 C 1.34667 * 108.02238 * 0.36720 * 18 17 16 20 20 N 1.35046 * 125.64324 * 90.00386 * 16 13 4 21 21 H 0.97000 * 126.40539 * 359.97438 * 20 16 13 22 22 H 1.09000 * 109.46717 * 146.54990 * 3 2 1 23 23 H 1.08996 * 109.47157 * 26.55301 * 3 2 1 24 24 H 0.97002 * 120.00371 * 180.02562 * 8 7 5 25 25 H 1.07998 * 125.99146 * 180.18303 * 18 17 16 26 26 H 1.08001 * 126.59535 * 179.81423 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0963 0.0840 1.3787 5 6 3.2852 -1.0591 2.1085 6 1 3.7464 -1.0073 3.0836 7 6 2.8890 -2.2853 1.5924 8 7 1.9087 -2.3449 0.7163 9 14 3.7473 -3.8511 2.1415 10 1 3.5913 -4.0123 3.6095 11 1 3.1415 -5.0166 1.4489 12 1 5.1909 -3.7690 1.8032 13 16 3.4199 1.5608 2.0546 14 8 2.6453 2.5100 1.3346 15 8 3.3253 1.3874 3.4617 16 6 5.1076 1.9329 1.7115 17 7 6.1242 1.6222 2.4685 18 6 7.2540 2.0602 1.8937 19 6 6.9245 2.6725 0.7404 20 7 5.5629 2.5921 0.6243 21 1 5.0256 2.9431 -0.1030 22 1 2.9710 0.8583 -0.5665 23 1 2.9718 -0.9184 -0.4594 24 1 1.6316 -3.2018 0.3559 25 1 8.2528 1.9450 2.2881 26 1 7.6039 3.1372 0.0411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309140699.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:01 Heat of formation + Delta-G solvation = 9.348926 kcal Electronic energy + Delta-G solvation = -17110.051366 eV Core-core repulsion = 14124.099654 eV Total energy + Delta-G solvation = -2985.951712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 256.042 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.97280 -38.49627 -38.24837 -36.91324 -36.27571 -33.63326 -33.35816 -30.65520 -29.20904 -25.90613 -23.67169 -22.48789 -20.78479 -20.19511 -19.77669 -18.68232 -17.86706 -16.82910 -16.61790 -16.33819 -15.96768 -15.51581 -15.00644 -14.76484 -14.61708 -14.13439 -13.63436 -13.36979 -13.23679 -13.21307 -13.02914 -12.71214 -12.62376 -12.25130 -12.08724 -11.85803 -11.48031 -11.24932 -11.22912 -10.18438 -9.84426 -8.29092 -5.85007 -0.69858 0.59530 1.52496 1.55255 1.62593 1.79123 2.03954 2.10297 2.32745 2.44654 2.61867 2.81169 3.05410 3.45981 3.64439 4.05012 4.24406 4.37177 4.50097 4.79272 4.88459 5.23836 5.61162 5.65800 6.18031 6.38227 6.81390 6.87077 7.10233 7.29177 8.75360 Molecular weight = 256.04amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.010403 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.455889 B = 2690.805048 C = 3423.090092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.264 3.736 3 C 0.234 3.766 4 N -0.846 5.846 5 C -0.344 4.344 6 H 0.104 0.896 7 C 0.017 3.983 8 N -0.893 5.893 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.264 1.264 13 S 2.708 3.292 14 O -0.974 6.974 15 O -0.973 6.973 16 C -0.366 4.366 17 N -0.437 5.437 18 C -0.067 4.067 19 C 0.025 3.975 20 N -0.506 5.506 21 H 0.443 0.557 22 H 0.130 0.870 23 H 0.134 0.866 24 H 0.272 0.728 25 H 0.205 0.795 26 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.976 7.316 -6.484 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.054 4.054 3 C 0.105 3.895 4 N -0.678 5.678 5 C -0.474 4.474 6 H 0.122 0.878 7 C -0.187 4.187 8 N -0.532 5.532 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.794 3.206 14 O -0.963 6.963 15 O -0.962 6.962 16 C -0.705 4.705 17 N -0.158 5.158 18 C -0.220 4.220 19 C -0.116 4.116 20 N -0.111 5.111 21 H 0.285 0.715 22 H 0.147 0.853 23 H 0.151 0.849 24 H 0.083 0.917 25 H 0.221 0.779 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.565 7.327 -5.337 13.920 hybrid contribution 0.988 -0.655 -0.725 1.390 sum 11.553 6.672 -6.062 14.654 Atomic orbital electron populations 1.80842 1.14966 1.14330 1.09503 1.29759 0.95948 0.88376 0.91351 1.18748 0.80363 1.06266 0.84123 1.53022 1.72802 1.21148 1.20866 1.19317 1.41929 0.84103 1.02044 0.87792 1.25559 0.95150 1.00744 0.97247 1.70016 1.22923 1.27273 1.33014 0.85401 0.79376 0.77876 0.78145 1.20593 1.20890 1.18857 1.01689 0.73426 0.72242 0.73217 1.93530 1.67307 1.61055 1.74449 1.93488 1.86021 1.85849 1.30860 1.37085 1.23055 1.14655 0.95708 1.70147 0.98842 1.17713 1.29138 1.23416 0.98420 1.04190 0.95960 1.24136 0.83774 1.02531 1.01173 1.43180 1.08832 1.40561 1.18570 0.71477 0.85272 0.84890 0.91735 0.77859 0.73889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.96 18.54 20.01 0.37 -25.59 15 2 C 0.26 12.18 13.48 89.44 1.21 13.39 15 3 C 0.23 9.06 5.07 84.57 0.43 9.49 15 4 N -0.85 -37.26 2.88 -352.54 -1.01 -38.28 15 5 C -0.34 -17.03 9.38 84.03 0.79 -16.25 15 6 H 0.10 5.38 7.41 -2.91 -0.02 5.36 15 7 C 0.02 0.81 4.88 84.86 0.41 1.22 15 8 N -0.89 -44.36 9.12 21.65 0.20 -44.16 15 9 Si 0.97 39.58 29.63 68.60 2.03 41.61 15 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 13 S 2.71 113.11 5.78 -56.49 -0.33 112.79 15 14 O -0.97 -39.50 17.05 -128.00 -2.18 -41.69 15 15 O -0.97 -48.91 16.89 -128.00 -2.16 -51.07 15 16 C -0.37 -12.64 8.15 180.26 1.47 -11.17 15 17 N -0.44 -16.00 11.25 -197.74 -2.22 -18.22 15 18 C -0.07 -1.67 11.87 83.52 0.99 -0.68 15 19 C 0.02 0.43 12.04 83.08 1.00 1.43 15 20 N -0.51 -11.70 6.15 -195.75 -1.20 -12.90 15 21 H 0.44 7.16 8.96 -92.71 -0.83 6.33 15 22 H 0.13 3.54 7.72 -2.39 -0.02 3.52 15 23 H 0.13 5.11 6.36 -2.39 -0.02 5.10 15 24 H 0.27 13.13 8.31 -92.71 -0.77 12.36 15 25 H 0.20 3.60 8.06 -2.91 -0.02 3.58 15 26 H 0.25 1.19 8.06 -2.91 -0.02 1.16 15 Total: -1.00 -74.27 258.35 0.20 -74.07 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.42 Total: 5.99 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.30 Total: -2.56 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -3.87 Total: -139.15 kcal Atomic # 8 Polarization: -88.41 SS G_CDS: -4.34 Total: -92.75 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: 113.11 SS G_CDS: -0.33 Total: 112.79 kcal Total: -74.27 0.20 -74.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309140699.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.422 kcal (2) G-P(sol) polarization free energy of solvation -74.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds