Wall clock time and date at job start Mon Mar 30 2020 04:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34874 * 116.99766 * 2 1 4 4 O 1.21615 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.46505 * 119.99997 * 180.02562 * 3 2 1 6 6 S 1.76214 * 126.17682 * 0.12623 * 5 3 2 7 7 C 1.70922 * 90.36851 * 180.18675 * 6 5 3 8 8 N 1.29397 * 110.58790 * 359.82824 * 7 6 5 9 9 C 1.30917 * 117.46666 * 359.97438 * 8 7 6 10 10 C 1.50697 * 123.03330 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 90.02863 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 H 1.09002 * 109.46887 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47252 * 299.99653 * 1 2 3 23 23 H 1.08999 * 109.47397 * 60.00126 * 1 2 3 24 24 H 1.08001 * 124.70768 * 179.85914 * 7 6 5 25 25 H 1.09001 * 109.47558 * 330.03027 * 10 9 8 26 26 H 1.08998 * 109.47216 * 210.02689 * 10 9 8 27 27 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 28 28 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 29 29 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 30 30 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5273 1.2785 -0.0006 6 16 4.6405 -0.0875 -0.0044 7 6 5.9724 0.9838 0.0030 8 7 5.5678 2.2128 0.0041 9 6 4.2756 2.4232 -0.0010 10 6 3.6677 3.8021 0.0000 11 7 3.4757 4.2536 -1.3846 12 6 2.8840 5.5977 -1.4228 13 6 2.7018 6.0258 -2.8561 14 1 2.9965 5.3657 -3.6585 15 6 2.1599 7.2607 -3.1432 16 7 1.8016 8.0648 -2.1661 17 14 1.9347 7.7917 -4.9199 18 1 0.5935 7.3686 -5.3968 19 1 2.0499 9.2692 -5.0134 20 1 2.9816 7.1593 -5.7621 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 7.0080 0.6773 0.0059 25 1 4.3335 4.4923 0.5182 26 1 2.7048 3.7743 0.5100 27 1 2.9142 3.5961 -1.9048 28 1 1.9157 5.5827 -0.9226 29 1 3.5447 6.3000 -0.9146 30 1 1.4201 8.9334 -2.3681 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380334634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:37 Heat of formation + Delta-G solvation = -33.220488 kcal Electronic energy + Delta-G solvation = -16428.983700 eV Core-core repulsion = 13544.726383 eV Total energy + Delta-G solvation = -2884.257317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60614 -39.53511 -36.47853 -35.07670 -32.48853 -30.97419 -28.58145 -27.13882 -25.81343 -23.77832 -22.43401 -21.33350 -19.48146 -18.69012 -16.96257 -16.77658 -16.46897 -16.21820 -14.97161 -14.83584 -14.66665 -14.21504 -13.67599 -13.27669 -13.22754 -12.90503 -12.53887 -12.21180 -11.81705 -11.27944 -11.00773 -10.88799 -10.75063 -10.64470 -10.45381 -9.93919 -9.75682 -9.64712 -9.17121 -8.92502 -8.41936 -7.24059 -5.96884 -3.98193 0.07099 1.10513 1.49694 2.27196 2.55939 2.93634 3.36180 3.41543 3.46836 4.12019 4.48919 4.75527 4.97433 5.01023 5.07404 5.10952 5.39032 5.43467 5.60328 5.87560 6.10044 6.19704 6.43273 7.29308 7.50941 7.61570 7.65997 7.82806 8.17312 8.41588 8.63811 9.09939 9.65605 11.14426 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.005410 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.680931 B = 5173.917567 C = 5879.716851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.542 3.458 4 O -0.475 6.475 5 C -0.296 4.296 6 S 0.183 5.817 7 C 0.036 3.964 8 N -0.458 5.458 9 C 0.186 3.814 10 C 0.112 3.888 11 N -0.674 5.674 12 C 0.196 3.804 13 C -0.511 4.511 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.102 0.898 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.207 0.793 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.328 0.672 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -20.108 6.704 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.384 3.616 4 O -0.363 6.363 5 C -0.419 4.419 6 S 0.439 5.561 7 C -0.258 4.258 8 N -0.171 5.171 9 C 0.046 3.954 10 C -0.020 4.020 11 N -0.305 5.305 12 C 0.070 3.930 13 C -0.550 4.550 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.120 0.880 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.223 0.777 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.593 -20.111 6.677 21.493 hybrid contribution -1.475 0.987 -0.682 1.901 sum 2.119 -19.124 5.995 20.154 Atomic orbital electron populations 1.23301 0.75450 1.03664 1.03120 1.86551 1.23961 1.32169 1.84972 1.19328 0.86542 0.81994 0.73705 1.90978 1.65380 1.35244 1.44692 1.24692 0.95375 0.97284 1.24499 1.83869 0.97227 1.09896 1.65084 1.28944 1.05080 0.91208 1.00618 1.66145 1.15000 1.20388 1.15563 1.21348 0.86438 0.96553 0.91044 1.20779 0.99080 0.87415 0.94694 1.60820 1.55412 1.06281 1.07969 1.19574 0.92619 0.83353 0.97462 1.21155 1.40376 1.01409 0.92065 0.92060 1.24977 0.95603 0.96486 0.97499 1.69972 1.42896 1.09536 1.31313 0.86474 0.78395 0.77594 0.84795 1.20768 1.21224 1.19802 0.87982 0.91655 0.91398 0.77681 0.89669 0.91725 0.85578 0.99019 0.95178 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.66 10.46 -40.97 -0.43 -5.09 16 3 C 0.54 8.59 7.92 34.06 0.27 8.86 16 4 O -0.48 -8.99 14.11 -19.35 -0.27 -9.27 16 5 C -0.30 -4.49 6.52 -36.79 -0.24 -4.73 16 6 S 0.18 1.92 23.09 -107.50 -2.48 -0.56 16 7 C 0.04 0.40 12.21 51.74 0.63 1.03 16 8 N -0.46 -7.21 10.49 -11.30 -0.12 -7.33 16 9 C 0.19 3.22 6.35 -83.52 -0.53 2.69 16 10 C 0.11 2.27 5.53 -4.97 -0.03 2.24 16 11 N -0.67 -15.98 6.48 -116.34 -0.75 -16.73 16 12 C 0.20 5.47 5.44 -4.98 -0.03 5.45 16 13 C -0.51 -15.20 9.32 -34.44 -0.32 -15.53 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 17 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 21 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.21 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 26 H 0.07 1.35 6.04 -51.93 -0.31 1.04 16 27 H 0.33 7.73 8.72 -39.29 -0.34 7.38 16 28 H -0.01 -0.24 8.14 -51.93 -0.42 -0.66 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 285.86 15.07 4.31 4.31 Total: -1.00 -34.40 285.86 -6.47 -40.86 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -3.16 Total: 0.36 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 0.73 Total: 3.00 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.14 Total: -51.01 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.70 Total: -14.36 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.48 Total: -0.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.40 -6.47 -40.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380334634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.641 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds