Wall clock time and date at job start Mon Mar 30 2020 04:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34874 * 116.99766 * 2 1 4 4 O 1.21615 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.46505 * 119.99997 * 180.02562 * 3 2 1 6 6 S 1.76214 * 126.17682 * 0.12623 * 5 3 2 7 7 C 1.70922 * 90.36851 * 180.18675 * 6 5 3 8 8 N 1.29397 * 110.58790 * 359.82824 * 7 6 5 9 9 C 1.30917 * 117.46666 * 359.97438 * 8 7 6 10 10 C 1.50697 * 123.03330 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 90.02863 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 H 1.09002 * 109.46887 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47252 * 299.99653 * 1 2 3 23 23 H 1.08999 * 109.47397 * 60.00126 * 1 2 3 24 24 H 1.08001 * 124.70768 * 179.85914 * 7 6 5 25 25 H 1.09001 * 109.47558 * 330.03027 * 10 9 8 26 26 H 1.08998 * 109.47216 * 210.02689 * 10 9 8 27 27 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 28 28 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 29 29 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 30 30 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5273 1.2785 -0.0006 6 16 4.6405 -0.0875 -0.0044 7 6 5.9724 0.9838 0.0030 8 7 5.5678 2.2128 0.0041 9 6 4.2756 2.4232 -0.0010 10 6 3.6677 3.8021 0.0000 11 7 3.4757 4.2536 -1.3846 12 6 2.8840 5.5977 -1.4228 13 6 2.7018 6.0258 -2.8561 14 1 2.9965 5.3657 -3.6585 15 6 2.1599 7.2607 -3.1432 16 7 1.8016 8.0648 -2.1661 17 14 1.9347 7.7917 -4.9199 18 1 0.5935 7.3686 -5.3968 19 1 2.0499 9.2692 -5.0134 20 1 2.9816 7.1593 -5.7621 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 7.0080 0.6773 0.0059 25 1 4.3335 4.4923 0.5182 26 1 2.7048 3.7743 0.5100 27 1 2.9142 3.5961 -1.9048 28 1 1.9157 5.5827 -0.9226 29 1 3.5447 6.3000 -0.9146 30 1 1.4201 8.9334 -2.3681 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380334634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:37 Heat of formation + Delta-G solvation = -59.777037 kcal Electronic energy + Delta-G solvation = -16430.135278 eV Core-core repulsion = 13544.726383 eV Total energy + Delta-G solvation = -2885.408895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77832 -40.65704 -37.67238 -36.96254 -34.61471 -32.30372 -30.05801 -28.49256 -27.24460 -25.33854 -23.63203 -23.40077 -20.62030 -19.89823 -18.61057 -17.95849 -17.81246 -17.58370 -16.76219 -16.32316 -15.91017 -15.81706 -14.96520 -14.76531 -14.56324 -14.30555 -14.18266 -13.57962 -13.34506 -13.07632 -12.75777 -12.65256 -12.34148 -12.02578 -11.91353 -11.83165 -11.37163 -10.78259 -10.70045 -10.68511 -9.98822 -9.22728 -8.24401 -6.36461 -0.99406 0.12744 0.51523 1.14082 1.38988 1.42067 1.52196 1.53925 1.74454 2.39101 3.07371 3.08438 3.53387 3.75890 3.91954 4.12637 4.27162 4.29622 4.52430 4.57452 4.66965 4.84243 5.02747 5.15896 5.21672 5.55611 5.95102 6.30563 6.48784 6.53074 6.60735 6.80759 7.33577 8.87808 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.005410 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.680931 B = 5173.917567 C = 5879.716851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.352 6.352 3 C 0.542 3.458 4 O -0.520 6.520 5 C -0.326 4.326 6 S 0.289 5.711 7 C 0.044 3.956 8 N -0.500 5.500 9 C 0.167 3.833 10 C 0.116 3.884 11 N -0.669 5.669 12 C 0.213 3.787 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.979 3.021 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.264 1.264 21 H 0.145 0.855 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.254 0.746 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.328 0.672 28 H -0.040 1.040 29 H 0.004 0.996 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 -22.705 5.638 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.386 3.614 4 O -0.410 6.410 5 C -0.449 4.449 6 S 0.546 5.454 7 C -0.248 4.248 8 N -0.214 5.214 9 C 0.025 3.975 10 C -0.015 4.015 11 N -0.299 5.299 12 C 0.085 3.915 13 C -0.576 4.576 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.573 5.573 17 Si 0.802 3.198 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.188 1.188 21 H 0.162 0.838 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.270 0.730 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.144 0.856 28 H -0.022 1.022 29 H 0.023 0.977 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.564 -22.779 5.626 23.903 hybrid contribution -1.749 1.597 -0.260 2.383 sum 2.815 -21.182 5.365 22.031 Atomic orbital electron populations 1.23643 0.73684 1.06254 1.02653 1.86541 1.25646 1.30409 1.84245 1.19588 0.87013 0.82145 0.72637 1.90957 1.66490 1.36769 1.46818 1.24830 0.95927 0.99515 1.24618 1.83490 0.93849 1.05859 1.62195 1.29733 1.07556 0.90038 0.97488 1.66088 1.14199 1.23139 1.17941 1.20737 0.87689 0.95260 0.93794 1.20564 0.98645 0.89972 0.92305 1.60679 1.54242 1.04544 1.10484 1.19201 0.90541 0.85266 0.96474 1.21474 1.41300 1.02201 0.92620 0.91935 1.26009 0.94667 0.96235 1.02821 1.70108 1.43162 1.10040 1.34023 0.85251 0.78833 0.77390 0.78308 1.19595 1.20268 1.18826 0.83754 0.91826 0.92316 0.73019 0.90658 0.93043 0.85557 1.02202 0.97741 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.57 113.37 1.20 1.76 16 2 O -0.35 -8.67 10.46 -57.88 -0.61 -9.28 16 3 C 0.54 17.30 7.92 69.98 0.55 17.86 16 4 O -0.52 -20.69 14.11 19.46 0.27 -20.42 16 5 C -0.33 -9.66 6.52 24.08 0.16 -9.50 16 6 S 0.29 5.02 23.09 -56.49 -1.30 3.71 16 7 C 0.04 0.82 12.21 130.60 1.59 2.42 16 8 N -0.50 -15.21 10.49 -189.67 -1.99 -17.20 16 9 C 0.17 5.83 6.35 42.35 0.27 6.10 16 10 C 0.12 5.02 5.53 85.55 0.47 5.50 16 11 N -0.67 -33.40 6.48 -521.98 -3.38 -36.78 16 12 C 0.21 12.59 5.44 85.56 0.47 13.05 16 13 C -0.54 -32.93 9.32 25.60 0.24 -32.69 16 14 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 15 C 0.00 0.05 5.46 84.66 0.46 0.52 16 16 N -0.93 -58.99 13.29 21.45 0.28 -58.71 16 17 Si 0.98 46.19 29.54 68.60 2.03 48.22 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 21 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.25 1.94 8.06 -2.91 -0.02 1.92 16 25 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 26 H 0.05 2.34 6.04 -2.39 -0.01 2.33 16 27 H 0.33 16.21 8.72 -89.69 -0.78 15.43 16 28 H -0.04 -2.54 8.14 -2.39 -0.02 -2.56 16 29 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.28 285.86 1.11 -77.17 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.39 Total: 8.28 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.41 Total: 5.01 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -5.09 Total: -112.69 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.33 Total: -29.70 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.30 Total: 3.71 kcal Total: -78.28 1.11 -77.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380334634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.393 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds