Wall clock time and date at job start Mon Mar 30 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00220 * 2 1 4 4 H 1.48506 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47130 * 300.00303 * 3 2 1 6 6 H 1.48506 * 109.46698 * 60.00582 * 3 2 1 7 7 C 1.37885 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00364 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00310 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00155 * 180.02562 * 11 10 9 14 14 N 1.46894 * 109.47209 * 179.97438 * 13 11 10 15 15 C 1.46905 * 111.00296 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47298 * 180.02562 * 15 14 13 17 17 C 1.35337 * 123.76799 * 94.99710 * 16 15 14 18 18 S 1.72118 * 104.15428 * 179.97438 * 17 16 15 19 19 N 1.56515 * 95.88471 * 0.02562 * 18 17 16 20 20 N 1.27573 * 109.22052 * 359.97438 * 19 18 17 21 21 H 0.96994 * 119.99637 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46875 * 60.00302 * 9 7 2 23 23 H 1.08994 * 109.47157 * 300.00537 * 9 7 2 24 24 H 0.97007 * 119.99464 * 0.02562 * 10 9 7 25 25 H 1.09005 * 109.47289 * 59.99892 * 13 11 10 26 26 H 1.09000 * 109.46950 * 300.00182 * 13 11 10 27 27 H 1.00901 * 111.00014 * 303.95602 * 14 13 11 28 28 H 1.08997 * 109.47069 * 60.00189 * 15 14 13 29 29 H 1.09001 * 109.46721 * 300.00117 * 15 14 13 30 30 H 1.07998 * 127.92351 * 359.94507 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7537 -4.8835 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0005 14 7 1.9984 -7.3011 -0.0006 15 6 2.9228 -8.4428 -0.0006 16 6 2.1347 -9.7273 -0.0014 17 6 1.8253 -10.4193 -1.1225 18 16 0.9350 -11.7755 -0.5477 19 7 1.0154 -11.3900 0.9670 20 7 1.6702 -10.3020 1.0893 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 3.1566 -3.4355 -0.0002 25 1 3.3589 -5.9713 0.8900 26 1 3.3602 -5.9710 -0.8900 27 1 1.3616 -7.3510 0.7805 28 1 3.5507 -8.4019 0.8894 29 1 3.5508 -8.4017 -0.8906 30 1 2.0785 -10.1761 -2.1438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398253227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:18 Heat of formation + Delta-G solvation = 33.898922 kcal Electronic energy + Delta-G solvation = -15646.918509 eV Core-core repulsion = 12797.864460 eV Total energy + Delta-G solvation = -2849.054050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12757 -38.88128 -35.98263 -34.14860 -32.50214 -32.26214 -28.61623 -27.31405 -26.56801 -24.23328 -22.25549 -21.41181 -19.74867 -18.67620 -17.31786 -16.32855 -16.10908 -15.67620 -15.57938 -15.21398 -14.62405 -14.13174 -13.90959 -13.82962 -12.90413 -12.64555 -12.38306 -12.14991 -11.95926 -11.86311 -11.46369 -10.96299 -10.90679 -10.37364 -10.32893 -10.16342 -9.98761 -9.38828 -9.09822 -8.74829 -8.51315 -7.88302 -6.17412 -4.24383 0.01848 0.87544 1.46285 1.93500 3.22878 3.29836 3.32813 3.36211 3.68559 3.92875 4.31358 4.51635 4.54868 4.72191 5.05776 5.18730 5.25031 5.36916 5.44919 5.46927 5.57311 6.71008 7.21490 7.31678 7.43325 7.51551 7.53441 7.66382 7.96451 8.61952 8.77819 9.10083 9.42372 10.92876 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.072736 B = 0.002969 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.860437 B = 9429.618286 C = 9591.330157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.496 3.504 12 O -0.543 6.543 13 C 0.041 3.959 14 N -0.669 5.669 15 C 0.143 3.857 16 C 0.030 3.970 17 C -0.270 4.270 18 S 0.417 5.583 19 N -0.288 5.288 20 N -0.235 5.235 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.357 0.643 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -21.010 -3.345 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.421 6.421 13 C -0.092 4.092 14 N -0.303 5.303 15 C 0.010 3.990 16 C -0.115 4.115 17 C -0.427 4.427 18 S 0.552 5.448 19 N -0.268 5.268 20 N -0.103 5.103 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.223 0.777 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.177 0.823 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.014 -22.333 -2.920 23.312 hybrid contribution 1.959 2.332 0.182 3.051 sum 7.973 -20.001 -2.738 21.705 Atomic orbital electron populations 1.69987 1.06120 1.27207 1.48938 1.24966 0.94919 0.99492 0.94716 0.86356 0.79806 0.82953 0.77757 1.19633 1.20788 1.20806 1.21264 0.93290 0.90444 1.53131 0.91838 1.19101 0.88303 0.81916 0.97747 1.46436 1.11118 1.06047 1.72668 1.20290 0.89486 0.84236 0.77981 1.90677 1.16691 1.84678 1.50064 1.21852 0.95770 0.88930 1.02637 1.60144 1.18467 0.99561 1.52092 1.20321 0.92150 0.83833 1.02650 1.22204 1.02026 1.00145 0.87111 1.28145 1.06929 1.01674 1.05982 1.81454 1.38827 1.22169 1.02373 1.78888 1.19913 1.12706 1.15260 1.71179 1.08713 1.02411 1.27986 0.92486 0.95505 0.95590 0.77735 0.92342 0.88226 0.82261 0.92677 0.88494 0.78331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.68 5.55 -61.48 -0.34 -15.02 16 11 C 0.50 9.68 7.87 -10.99 -0.09 9.59 16 12 O -0.54 -13.12 16.20 5.56 0.09 -13.03 16 13 C 0.04 0.54 6.17 -4.98 -0.03 0.51 16 14 N -0.67 -8.99 6.11 -116.34 -0.71 -9.70 16 15 C 0.14 1.42 6.17 -4.97 -0.03 1.39 16 16 C 0.03 0.33 6.40 -83.66 -0.54 -0.21 16 17 C -0.27 -2.23 11.34 29.70 0.34 -1.90 16 18 S 0.42 3.33 23.40 -107.50 -2.52 0.82 16 19 N -0.29 -3.53 12.54 60.35 0.76 -2.78 16 20 N -0.23 -3.08 11.68 32.45 0.38 -2.70 16 21 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.39 6.73 8.32 -40.82 -0.34 6.39 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.36 5.45 8.42 -39.29 -0.33 5.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 287.28 15.07 4.33 4.33 Total: -1.00 -34.24 287.28 -6.25 -40.49 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.16 Total: 4.61 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.79 Total: 2.63 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.82 Total: -55.58 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.52 Total: 0.82 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.24 -6.25 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398253227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.393 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds