Wall clock time and date at job start Mon Mar 30 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00220 * 2 1 4 4 H 1.48506 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47130 * 300.00303 * 3 2 1 6 6 H 1.48506 * 109.46698 * 60.00582 * 3 2 1 7 7 C 1.37885 * 119.99516 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99571 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00364 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47322 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00310 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99689 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00155 * 180.02562 * 11 10 9 14 14 N 1.46894 * 109.47209 * 179.97438 * 13 11 10 15 15 C 1.46905 * 111.00296 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47298 * 180.02562 * 15 14 13 17 17 C 1.35337 * 123.76799 * 94.99710 * 16 15 14 18 18 S 1.72118 * 104.15428 * 179.97438 * 17 16 15 19 19 N 1.56515 * 95.88471 * 0.02562 * 18 17 16 20 20 N 1.27573 * 109.22052 * 359.97438 * 19 18 17 21 21 H 0.96994 * 119.99637 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46875 * 60.00302 * 9 7 2 23 23 H 1.08994 * 109.47157 * 300.00537 * 9 7 2 24 24 H 0.97007 * 119.99464 * 0.02562 * 10 9 7 25 25 H 1.09005 * 109.47289 * 59.99892 * 13 11 10 26 26 H 1.09000 * 109.46950 * 300.00182 * 13 11 10 27 27 H 1.00901 * 111.00014 * 303.95602 * 14 13 11 28 28 H 1.08997 * 109.47069 * 60.00189 * 15 14 13 29 29 H 1.09001 * 109.46721 * 300.00117 * 15 14 13 30 30 H 1.07998 * 127.92351 * 359.94507 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7537 -4.8835 -0.0011 12 8 0.5613 -5.1050 -0.0011 13 6 2.7329 -6.0289 -0.0005 14 7 1.9984 -7.3011 -0.0006 15 6 2.9228 -8.4428 -0.0006 16 6 2.1347 -9.7273 -0.0014 17 6 1.8253 -10.4193 -1.1225 18 16 0.9350 -11.7755 -0.5477 19 7 1.0154 -11.3900 0.9670 20 7 1.6702 -10.3020 1.0893 21 1 -0.4849 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 3.1566 -3.4355 -0.0002 25 1 3.3589 -5.9713 0.8900 26 1 3.3602 -5.9710 -0.8900 27 1 1.3616 -7.3510 0.7805 28 1 3.5507 -8.4019 0.8894 29 1 3.5508 -8.4017 -0.8906 30 1 2.0785 -10.1761 -2.1438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398253227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:18 Heat of formation + Delta-G solvation = 4.512730 kcal Electronic energy + Delta-G solvation = -15648.192790 eV Core-core repulsion = 12797.864460 eV Total energy + Delta-G solvation = -2850.328330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.073 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.89016 -40.48229 -37.02003 -36.04351 -34.33663 -33.27531 -30.08956 -28.47579 -27.73104 -25.47990 -24.03124 -22.14489 -21.38197 -19.54928 -18.85729 -17.72464 -17.24404 -16.96734 -16.73874 -16.54293 -16.13464 -15.52182 -15.08923 -14.95074 -14.31390 -14.07444 -13.94562 -13.46238 -13.10951 -12.94645 -12.85861 -12.74183 -12.47680 -12.20998 -11.44829 -11.09897 -10.90632 -10.81059 -10.74550 -10.69702 -9.81734 -9.46145 -8.28644 -6.45182 -0.68442 0.23835 0.75891 1.14624 1.44115 1.45233 1.58726 1.81190 2.31376 2.53456 3.06426 3.06513 3.39935 3.83018 3.99724 4.06994 4.40937 4.43929 4.54114 4.63764 4.78714 5.12325 5.25213 5.50296 5.68417 5.84715 5.87262 6.12243 6.66936 6.79072 6.96072 7.24693 7.54733 8.83913 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.072736 B = 0.002969 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.860437 B = 9429.618286 C = 9591.330157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.707 5.707 11 C 0.491 3.509 12 O -0.597 6.597 13 C 0.058 3.942 14 N -0.687 5.687 15 C 0.147 3.853 16 C 0.008 3.992 17 C -0.262 4.262 18 S 0.484 5.516 19 N -0.342 5.342 20 N -0.273 5.273 21 H 0.268 0.732 22 H -0.014 1.014 23 H -0.016 1.016 24 H 0.410 0.590 25 H 0.089 0.911 26 H 0.136 0.864 27 H 0.342 0.658 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.880 -21.331 -4.552 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.358 5.358 11 C 0.278 3.722 12 O -0.478 6.478 13 C -0.073 4.073 14 N -0.319 5.319 15 C 0.015 3.985 16 C -0.138 4.138 17 C -0.419 4.419 18 S 0.618 5.382 19 N -0.320 5.320 20 N -0.140 5.140 21 H 0.077 0.923 22 H 0.004 0.996 23 H 0.002 0.998 24 H 0.246 0.754 25 H 0.107 0.893 26 H 0.154 0.846 27 H 0.159 0.841 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.899 -22.692 -4.119 24.720 hybrid contribution 1.010 2.292 0.471 2.549 sum 9.909 -20.400 -3.649 22.971 Atomic orbital electron populations 1.70153 1.08356 1.28475 1.50163 1.26101 0.95771 1.04029 0.93928 0.85095 0.79177 0.77251 0.77589 1.17405 1.20499 1.20639 1.21670 0.94394 0.90500 1.52577 0.89570 1.18513 0.88771 0.84515 0.93899 1.46152 1.11220 1.05432 1.73016 1.21498 0.89966 0.85070 0.75693 1.90653 1.19651 1.85444 1.52045 1.21794 0.93861 0.85971 1.05713 1.60166 1.19492 1.00647 1.51596 1.20459 0.91506 0.82014 1.04489 1.22443 1.02960 1.00910 0.87481 1.28618 1.05374 1.01003 1.06887 1.81130 1.36785 1.20658 0.99595 1.78590 1.21540 1.13366 1.18554 1.71191 1.09810 1.03174 1.29841 0.92306 0.99622 0.99797 0.75384 0.89279 0.84603 0.84064 0.92000 0.85308 0.75141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.99 42.07 29.54 68.60 2.03 44.10 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -29.88 9.28 25.60 0.24 -29.64 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.60 5.43 85.63 0.46 15.06 16 10 N -0.71 -28.96 5.55 -466.80 -2.59 -31.55 16 11 C 0.49 19.01 7.87 87.66 0.69 19.70 16 12 O -0.60 -29.85 16.20 -3.02 -0.05 -29.90 16 13 C 0.06 1.38 6.17 85.56 0.53 1.91 16 14 N -0.69 -17.28 6.11 -521.99 -3.19 -20.47 16 15 C 0.15 2.52 6.17 85.56 0.53 3.05 16 16 C 0.01 0.15 6.40 41.90 0.27 0.42 16 17 C -0.26 -3.63 11.34 67.15 0.76 -2.87 16 18 S 0.48 6.93 23.40 -56.49 -1.32 5.60 16 19 N -0.34 -8.31 12.54 37.02 0.46 -7.85 16 20 N -0.27 -7.13 11.68 -51.26 -0.60 -7.73 16 21 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 22 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 23 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 24 H 0.41 13.35 8.32 -92.70 -0.77 12.58 16 25 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.34 10.41 8.42 -89.69 -0.76 9.66 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.13 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.23 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -79.27 287.28 -1.37 -80.65 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.34 Total: 15.27 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 3.94 Total: 8.15 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -5.63 Total: -123.87 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.05 Total: -29.90 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.32 Total: 5.60 kcal Total: -79.27 -1.37 -80.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398253227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.158 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds