Wall clock time and date at job start Mon Mar 30 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46878 * 2 1 4 4 C 1.34946 * 116.99937 * 180.02562 * 3 2 1 5 5 O 1.21662 * 119.99862 * 0.02562 * 4 3 2 6 6 C 1.46255 * 120.00008 * 180.02562 * 4 3 2 7 7 C 1.33613 * 122.41713 * 179.97438 * 6 4 3 8 8 S 1.75846 * 109.86170 * 179.77996 * 7 6 4 9 9 C 1.75899 * 91.02273 * 0.31849 * 8 7 6 10 10 N 1.30798 * 125.31538 * 179.97438 * 9 8 7 11 11 C 1.46493 * 119.99858 * 359.68679 * 10 9 8 12 12 C 1.50706 * 109.47128 * 120.00419 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72498 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 N 1.35536 * 109.36751 * 359.68449 * 9 8 7 21 21 H 0.97005 * 122.71323 * 180.24515 * 20 9 8 22 22 H 1.08996 * 109.47014 * 299.99374 * 1 2 3 23 23 H 1.08996 * 109.47423 * 59.99747 * 1 2 3 24 24 H 1.09000 * 109.46654 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47247 * 240.00527 * 2 1 3 26 26 H 1.08996 * 109.47423 * 120.00253 * 2 1 3 27 27 H 1.08005 * 125.07343 * 0.02725 * 7 6 4 28 28 H 1.09001 * 109.47786 * 0.02562 * 11 10 9 29 29 H 1.08998 * 109.47558 * 240.00555 * 11 10 9 30 30 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3441 1.5242 -0.0005 5 8 4.0852 0.5593 -0.0015 6 6 3.9030 2.8757 0.0000 7 6 5.2191 3.1065 0.0000 8 16 5.5218 4.8387 -0.0056 9 6 3.7948 5.1724 0.0020 10 7 3.2550 6.3638 0.0022 11 6 4.1082 7.5546 0.0027 12 6 3.8235 8.3771 -1.2275 13 1 3.0814 8.0456 -1.9388 14 6 4.5065 9.5553 -1.4425 15 7 5.4063 9.9616 -0.5736 16 14 4.1531 10.5752 -2.9670 17 1 3.1059 9.9049 -3.7790 18 1 3.6790 11.9229 -2.5621 19 1 5.3938 10.7081 -3.7722 20 7 3.1109 4.0023 0.0011 21 1 2.1417 3.9615 0.0012 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 5.9831 2.3431 -0.0008 28 1 5.1552 7.2515 0.0024 29 1 3.9021 8.1489 0.8929 30 1 5.8866 10.7907 -0.7245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450484253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:22 Heat of formation + Delta-G solvation = -41.592515 kcal Electronic energy + Delta-G solvation = -15974.451177 eV Core-core repulsion = 13089.830822 eV Total energy + Delta-G solvation = -2884.620355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.93948 -38.88015 -36.98869 -34.81668 -32.54627 -31.95628 -30.15693 -27.28688 -25.90359 -23.39169 -22.59903 -21.17384 -20.30928 -18.79602 -17.10662 -16.96123 -16.85704 -16.34689 -15.28691 -14.78857 -14.62623 -14.01885 -13.91765 -13.73766 -13.42492 -13.07387 -12.47339 -12.25565 -11.92931 -11.85822 -11.21548 -11.05017 -10.88982 -10.78656 -10.70756 -10.28175 -10.18296 -9.55839 -9.14531 -8.68146 -8.27026 -6.84590 -6.10665 -4.16391 0.84855 1.67696 1.93703 2.51004 2.62688 2.98612 3.13859 3.27479 3.34586 3.40975 4.38649 4.55114 4.63481 4.71409 4.96534 5.16135 5.22707 5.41077 5.47656 5.55234 5.67338 5.96226 6.09561 6.67550 7.08136 7.33741 7.45329 7.47293 7.82177 8.12070 8.59809 8.92315 9.48292 10.97140 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.034095 B = 0.004424 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.029214 B = 6328.137578 C = 6831.836857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.349 6.349 4 C 0.535 3.465 5 O -0.493 6.493 6 C 0.076 3.924 7 C -0.181 4.181 8 S 0.044 5.956 9 C 0.320 3.680 10 N -0.517 5.517 11 C 0.197 3.803 12 C -0.512 4.512 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.620 5.620 21 H 0.425 0.575 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.184 0.816 28 H 0.013 0.987 29 H 0.050 0.950 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 -18.503 1.841 19.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.266 6.266 4 C 0.377 3.623 5 O -0.381 6.381 6 C -0.040 4.040 7 C -0.326 4.326 8 S 0.287 5.713 9 C -0.068 4.068 10 N -0.245 5.245 11 C 0.070 3.930 12 C -0.550 4.550 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.249 5.249 21 H 0.265 0.735 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.201 0.799 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.262 -17.268 1.876 17.885 hybrid contribution -0.864 -0.478 -0.768 1.251 sum -5.127 -17.747 1.108 18.506 Atomic orbital electron populations 1.21826 0.92319 1.03066 1.03824 1.22714 0.95621 0.80129 1.02724 1.86189 1.23462 1.32852 1.84123 1.19981 0.80797 0.88169 0.73383 1.90920 1.60309 1.40907 1.45920 1.17762 0.90522 0.84654 1.11019 1.25333 0.96655 1.02538 1.08038 1.86031 1.07390 0.95579 1.82330 1.24140 0.90284 0.90058 1.02334 1.71549 1.36192 0.96854 1.19931 1.19887 0.89297 0.84903 0.98951 1.21076 1.22236 1.05733 1.06004 0.91696 1.24990 0.94880 0.97327 0.97169 1.69957 1.24901 1.22854 1.35532 0.86329 0.78242 0.79839 0.82411 1.19602 1.20773 1.20794 1.41270 1.09603 1.00964 1.73093 0.73490 0.91304 0.91270 0.90152 0.91170 0.91185 0.79895 0.96966 0.93219 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.54 6.10 37.16 0.23 0.76 16 3 O -0.35 -4.01 9.81 -41.17 -0.40 -4.41 16 4 C 0.53 7.09 7.89 33.95 0.27 7.36 16 5 O -0.49 -7.14 16.38 -19.39 -0.32 -7.45 16 6 C 0.08 1.10 6.70 -83.62 -0.56 0.54 16 7 C -0.18 -2.61 10.64 29.11 0.31 -2.30 16 8 S 0.04 0.79 21.37 -107.50 -2.30 -1.51 16 9 C 0.32 6.36 8.33 -89.67 -0.75 5.61 16 10 N -0.52 -12.23 10.63 -62.70 -0.67 -12.90 16 11 C 0.20 5.30 6.09 -5.19 -0.03 5.27 16 12 C -0.51 -14.77 9.39 -34.44 -0.32 -15.10 16 13 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.62 -9.93 5.66 -10.75 -0.06 -10.00 16 21 H 0.43 6.09 8.67 -40.82 -0.35 5.74 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.18 2.18 7.94 -52.48 -0.42 1.76 16 28 H 0.01 0.35 6.19 -51.93 -0.32 0.03 16 29 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 286.61 15.07 4.32 4.32 Total: -1.00 -31.53 286.61 -7.46 -38.99 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.17 Total: -1.29 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.57 Total: 3.13 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.01 Total: -48.43 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.72 Total: -11.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.30 Total: -1.51 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.53 -7.46 -38.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450484253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.606 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds