Wall clock time and date at job start Mon Mar 30 2020 04:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46878 * 2 1 4 4 C 1.34946 * 116.99937 * 180.02562 * 3 2 1 5 5 O 1.21662 * 119.99862 * 0.02562 * 4 3 2 6 6 C 1.46255 * 120.00008 * 180.02562 * 4 3 2 7 7 C 1.33613 * 122.41713 * 179.97438 * 6 4 3 8 8 S 1.75846 * 109.86170 * 179.77996 * 7 6 4 9 9 C 1.75899 * 91.02273 * 0.31849 * 8 7 6 10 10 N 1.30798 * 125.31538 * 179.97438 * 9 8 7 11 11 C 1.46493 * 119.99858 * 359.68679 * 10 9 8 12 12 C 1.50706 * 109.47128 * 120.00419 * 11 10 9 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72498 * 12 11 10 15 15 N 1.31515 * 119.99684 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46683 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47426 * 119.99743 * 16 14 12 19 19 H 1.48501 * 109.46833 * 239.99986 * 16 14 12 20 20 N 1.35536 * 109.36751 * 359.68449 * 9 8 7 21 21 H 0.97005 * 122.71323 * 180.24515 * 20 9 8 22 22 H 1.08996 * 109.47014 * 299.99374 * 1 2 3 23 23 H 1.08996 * 109.47423 * 59.99747 * 1 2 3 24 24 H 1.09000 * 109.46654 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47247 * 240.00527 * 2 1 3 26 26 H 1.08996 * 109.47423 * 120.00253 * 2 1 3 27 27 H 1.08005 * 125.07343 * 0.02725 * 7 6 4 28 28 H 1.09001 * 109.47786 * 0.02562 * 11 10 9 29 29 H 1.08998 * 109.47558 * 240.00555 * 11 10 9 30 30 H 0.97004 * 120.00247 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3441 1.5242 -0.0005 5 8 4.0852 0.5593 -0.0015 6 6 3.9030 2.8757 0.0000 7 6 5.2191 3.1065 0.0000 8 16 5.5218 4.8387 -0.0056 9 6 3.7948 5.1724 0.0020 10 7 3.2550 6.3638 0.0022 11 6 4.1082 7.5546 0.0027 12 6 3.8235 8.3771 -1.2275 13 1 3.0814 8.0456 -1.9388 14 6 4.5065 9.5553 -1.4425 15 7 5.4063 9.9616 -0.5736 16 14 4.1531 10.5752 -2.9670 17 1 3.1059 9.9049 -3.7790 18 1 3.6790 11.9229 -2.5621 19 1 5.3938 10.7081 -3.7722 20 7 3.1109 4.0023 0.0011 21 1 2.1417 3.9615 0.0012 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 5.9831 2.3431 -0.0008 28 1 5.1552 7.2515 0.0024 29 1 3.9021 8.1489 0.8929 30 1 5.8866 10.7907 -0.7245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450484253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:22 Heat of formation + Delta-G solvation = -63.003781 kcal Electronic energy + Delta-G solvation = -15975.379640 eV Core-core repulsion = 13089.830822 eV Total energy + Delta-G solvation = -2885.548817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.01975 -40.19974 -38.01001 -36.60046 -34.54576 -32.64474 -31.61309 -29.14014 -27.20097 -24.93521 -23.70476 -22.64488 -21.52557 -20.06496 -18.67591 -18.27104 -18.04612 -17.87415 -16.84379 -16.43141 -15.99798 -15.31492 -15.09105 -14.98493 -14.80130 -14.38081 -13.79171 -13.63078 -13.05079 -12.95987 -12.71643 -12.58415 -12.46752 -12.27162 -12.02192 -11.91625 -11.53583 -11.27515 -10.79493 -10.68910 -10.11797 -8.49809 -8.16390 -6.40769 -0.31753 0.19618 0.58975 1.03568 1.39832 1.40420 1.50210 1.55046 1.69219 1.81281 2.38800 3.04316 3.57028 3.86498 4.02972 4.06285 4.31682 4.36264 4.49472 4.76913 4.91044 4.93845 5.06479 5.16914 5.32718 5.42406 5.62152 5.99026 6.05052 6.43065 6.65964 6.93747 7.30566 8.82773 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.034095 B = 0.004424 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.029214 B = 6328.137578 C = 6831.836857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.545 3.455 5 O -0.502 6.502 6 C 0.074 3.926 7 C -0.163 4.163 8 S 0.029 5.971 9 C 0.331 3.669 10 N -0.564 5.564 11 C 0.211 3.789 12 C -0.536 4.536 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.925 5.925 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.272 1.272 19 H -0.271 1.271 20 N -0.608 5.608 21 H 0.434 0.566 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.216 0.784 28 H 0.002 0.998 29 H 0.017 0.983 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.332 -20.298 0.985 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.387 3.613 5 O -0.390 6.390 6 C -0.040 4.040 7 C -0.306 4.306 8 S 0.271 5.729 9 C -0.057 4.057 10 N -0.295 5.295 11 C 0.083 3.917 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.197 1.197 20 N -0.237 5.237 21 H 0.275 0.725 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.232 0.768 28 H 0.019 0.981 29 H 0.035 0.965 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.662 -19.132 1.028 19.719 hybrid contribution -0.735 -0.181 -0.448 0.879 sum -5.397 -19.313 0.580 20.061 Atomic orbital electron populations 1.21858 0.90491 1.04572 1.03655 1.23071 0.97033 0.78653 1.03328 1.86194 1.22151 1.34826 1.83514 1.19600 0.81452 0.87091 0.73126 1.90927 1.60769 1.40857 1.46484 1.18003 0.90480 0.84896 1.10626 1.25560 0.97373 1.00567 1.07138 1.86170 1.05641 0.98825 1.82269 1.24299 0.91674 0.90233 0.99477 1.71475 1.35872 0.97052 1.25063 1.19454 0.89195 0.86125 0.96958 1.21345 1.22460 1.06875 1.06803 0.92710 1.25907 0.94373 0.98292 1.00404 1.70060 1.25591 1.23469 1.37318 0.85249 0.78403 0.78113 0.78347 1.19266 1.19761 1.19665 1.41289 1.10281 1.00263 1.71907 0.72457 0.91400 0.91499 0.87802 0.90649 0.90528 0.76751 0.98094 0.96492 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.77 6.10 71.98 0.44 1.21 16 3 O -0.35 -7.22 9.81 -58.62 -0.57 -7.80 16 4 C 0.55 13.07 7.89 69.91 0.55 13.62 16 5 O -0.50 -13.10 16.38 19.31 0.32 -12.78 16 6 C 0.07 1.99 6.70 39.25 0.26 2.26 16 7 C -0.16 -4.31 10.64 66.77 0.71 -3.60 16 8 S 0.03 1.01 21.37 -56.49 -1.21 -0.20 16 9 C 0.33 13.19 8.33 180.02 1.50 14.69 16 10 N -0.56 -27.47 10.63 -352.27 -3.74 -31.21 16 11 C 0.21 11.87 6.09 85.64 0.52 12.39 16 12 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 13 H 0.05 3.27 7.81 -2.91 -0.02 3.25 16 14 C 0.01 0.56 5.46 84.65 0.46 1.02 16 15 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 16 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 N -0.61 -18.81 5.66 -187.94 -1.06 -19.87 16 21 H 0.43 11.94 8.67 -92.70 -0.80 11.14 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.08 1.06 8.13 -2.38 -0.02 1.04 16 26 H 0.08 1.05 8.13 -2.39 -0.02 1.03 16 27 H 0.22 4.34 7.94 -2.91 -0.02 4.31 16 28 H 0.00 0.09 6.19 -2.39 -0.01 0.07 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -68.66 286.61 1.83 -66.83 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 0.37 Total: 4.24 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.43 Total: 9.20 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.52 Total: -106.19 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.26 Total: -20.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -1.21 Total: -0.20 kcal Total: -68.66 1.83 -66.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450484253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.826 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds