Wall clock time and date at job start Mon Mar 30 2020 04:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37499 * 119.82840 * 2 1 4 4 S 1.76203 * 120.31016 * 359.97438 * 3 2 1 5 5 C 1.81007 * 99.99840 * 292.41492 * 4 3 2 6 6 C 1.50701 * 109.46833 * 185.07386 * 5 4 3 7 7 H 1.07997 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99535 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00053 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99782 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47217 * 89.99973 * 10 8 6 12 12 H 1.48507 * 109.47321 * 210.00116 * 10 8 6 13 13 H 1.48500 * 109.47587 * 329.99760 * 10 8 6 14 14 C 1.36846 * 119.37881 * 179.97438 * 3 2 1 15 15 C 1.40272 * 119.05272 * 359.97438 * 14 3 2 16 16 O 1.21939 * 120.18903 * 179.72250 * 15 14 3 17 17 N 1.34753 * 119.62515 * 359.97438 * 15 14 3 18 18 C 1.46499 * 119.69975 * 179.97438 * 17 15 14 19 19 C 1.34537 * 120.60029 * 359.97438 * 17 15 14 20 20 O 1.21583 * 119.50262 * 180.02562 * 19 17 15 21 21 H 1.08995 * 109.47000 * 94.57718 * 1 2 3 22 22 H 1.09003 * 109.47070 * 214.57813 * 1 2 3 23 23 H 1.08995 * 109.46809 * 334.57202 * 1 2 3 24 24 H 1.09001 * 109.46719 * 305.07061 * 5 4 3 25 25 H 1.08996 * 109.47113 * 65.07068 * 5 4 3 26 26 H 0.97007 * 119.99495 * 179.97438 * 9 8 6 27 27 H 1.07998 * 120.47398 * 180.02562 * 14 3 2 28 28 H 1.09003 * 109.46914 * 0.02562 * 18 17 15 29 29 H 1.08996 * 109.46971 * 120.00111 * 18 17 15 30 30 H 1.09004 * 109.46823 * 240.00099 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1490 1.1928 0.0000 4 16 1.2717 2.7209 -0.0007 5 6 0.5263 2.6547 -1.6489 6 6 -0.1925 3.9495 -1.9274 7 1 -0.1997 4.7338 -1.1850 8 6 -0.8410 4.1329 -3.1303 9 7 -0.8318 3.1781 -4.0347 10 14 -1.7327 5.7377 -3.4754 11 1 -0.7971 6.6957 -4.1174 12 1 -2.8793 5.4815 -4.3837 13 1 -2.2306 6.3117 -2.1996 14 6 3.5174 1.1821 0.0005 15 6 4.1889 -0.0494 0.0016 16 8 5.4078 -0.0832 -0.0030 17 7 3.4794 -1.1950 0.0026 18 6 4.1791 -2.4822 0.0032 19 6 2.1343 -1.1675 0.0031 20 8 1.5141 -2.2133 0.0045 21 1 -0.3633 -0.0820 -1.0243 22 1 -0.3633 -0.8462 0.5832 23 1 -0.3633 0.9281 0.4412 24 1 1.3069 2.5046 -2.3947 25 1 -0.1829 1.8283 -1.6939 26 1 -1.2884 3.3071 -4.8808 27 1 4.0724 2.1086 0.0010 28 1 5.2555 -2.3105 0.0031 29 1 3.9015 -3.0462 0.8936 30 1 3.9008 -3.0473 -0.8864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596270230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:14 Heat of formation + Delta-G solvation = -35.357858 kcal Electronic energy + Delta-G solvation = -16807.087265 eV Core-core repulsion = 13922.737266 eV Total energy + Delta-G solvation = -2884.350000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.11953 -38.90245 -37.08239 -35.10794 -33.43530 -31.80216 -29.01746 -28.16134 -26.78022 -24.23057 -23.22482 -23.03688 -19.27821 -17.89018 -17.43418 -17.08338 -16.53620 -15.86463 -15.35557 -14.94387 -14.69666 -14.25664 -13.68627 -13.59692 -13.20603 -12.89427 -12.79482 -12.59368 -12.28953 -11.98814 -11.56298 -11.22767 -11.03047 -10.77614 -10.50003 -10.15327 -9.87523 -9.73883 -9.47826 -8.84517 -8.42893 -7.34866 -6.42578 -4.50958 0.79293 1.62725 2.07214 2.15589 3.02999 3.13644 3.20698 3.21034 3.27994 3.60508 4.16450 4.63057 4.95143 5.15527 5.21746 5.30495 5.40157 5.48576 5.55386 5.65640 5.75391 5.84548 6.00286 6.49345 6.68153 6.74906 7.24892 7.47266 7.56470 7.66929 7.98216 8.50341 9.15113 10.67899 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.005578 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.590201 B = 5018.677722 C = 5301.496820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.521 5.521 3 C 0.183 3.817 4 S -0.115 6.115 5 C 0.066 3.934 6 C -0.525 4.525 7 H 0.071 0.929 8 C 0.072 3.928 9 N -0.886 5.886 10 Si 0.911 3.089 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.268 4.268 15 C 0.552 3.448 16 O -0.527 6.527 17 N -0.557 5.557 18 C 0.081 3.919 19 C 0.694 3.306 20 O -0.544 6.544 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.270 0.730 27 H 0.177 0.823 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -5.855 7.098 9.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.241 5.241 3 C -0.033 4.033 4 S 0.119 5.881 5 C -0.080 4.080 6 C -0.565 4.565 7 H 0.089 0.911 8 C -0.134 4.134 9 N -0.523 5.523 10 Si 0.737 3.263 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.299 4.299 15 C 0.348 3.652 16 O -0.405 6.405 17 N -0.301 5.301 18 C -0.061 4.061 19 C 0.395 3.605 20 O -0.419 6.419 21 H 0.102 0.898 22 H 0.109 0.891 23 H 0.127 0.873 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.194 0.806 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.666 -5.760 7.734 10.317 hybrid contribution -0.410 -0.184 -1.272 1.349 sum 3.256 -5.944 6.463 9.365 Atomic orbital electron populations 1.22397 0.74253 1.06012 1.05024 1.45313 1.09610 1.03453 1.65765 1.23930 0.95580 0.91415 0.92423 1.86182 1.59963 1.11905 1.30051 1.21617 0.98467 1.02655 0.85310 1.20542 1.34364 0.99260 1.02313 0.91073 1.24954 0.95694 0.97527 0.95230 1.69938 1.42265 1.32804 1.07247 0.86285 0.79134 0.82310 0.78587 1.20122 1.20818 1.19385 1.22151 0.91474 0.99008 1.17316 1.17033 0.87919 0.83799 0.76401 1.90878 1.12616 1.87175 1.49801 1.46306 1.06057 1.10806 1.66953 1.21849 0.98735 0.81979 1.03513 1.15872 0.81574 0.84191 0.78841 1.90977 1.66278 1.29853 1.54765 0.89840 0.89062 0.87280 0.93360 0.93270 0.92069 0.80563 0.88091 0.90615 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.76 59.85 0.52 1.47 16 2 N -0.52 -8.51 3.03 -127.29 -0.39 -8.89 16 3 C 0.18 3.06 6.35 -15.51 -0.10 2.96 16 4 S -0.12 -2.08 19.97 -107.50 -2.15 -4.23 16 5 C 0.07 1.46 5.19 36.01 0.19 1.65 16 6 C -0.53 -13.01 9.13 -34.44 -0.31 -13.33 16 7 H 0.07 1.74 7.71 -52.49 -0.40 1.33 16 8 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -23.67 13.29 55.43 0.74 -22.93 16 10 Si 0.91 19.55 29.54 -169.99 -5.02 14.53 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C -0.27 -4.37 9.73 -39.32 -0.38 -4.75 16 15 C 0.55 9.31 7.40 -15.51 -0.11 9.20 16 16 O -0.53 -9.76 16.41 4.97 0.08 -9.68 16 17 N -0.56 -8.79 2.96 -131.93 -0.39 -9.18 16 18 C 0.08 1.00 9.97 59.85 0.60 1.60 16 19 C 0.69 11.66 8.12 -87.31 -0.71 10.95 16 20 O -0.54 -9.82 15.86 5.29 0.08 -9.74 16 21 H 0.08 1.27 7.29 -51.93 -0.38 0.90 16 22 H 0.09 1.19 7.52 -51.93 -0.39 0.80 16 23 H 0.11 1.54 6.41 -51.93 -0.33 1.21 16 24 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.05 1.11 6.06 -51.92 -0.31 0.79 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.18 2.65 8.06 -52.49 -0.42 2.23 16 28 H 0.10 1.19 6.88 -51.93 -0.36 0.83 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 275.14 15.07 4.15 4.15 Total: -1.00 -28.41 275.14 -6.31 -34.71 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.00 Total: -0.22 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.41 Total: 11.47 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.04 Total: -41.00 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.15 Total: -4.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.41 -6.31 -34.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.645 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds