Wall clock time and date at job start Mon Mar 30 2020 04:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37499 * 119.82840 * 2 1 4 4 S 1.76203 * 120.31016 * 359.97438 * 3 2 1 5 5 C 1.81007 * 99.99840 * 292.41492 * 4 3 2 6 6 C 1.50701 * 109.46833 * 185.07386 * 5 4 3 7 7 H 1.07997 * 120.00271 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99535 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00053 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99782 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47217 * 89.99973 * 10 8 6 12 12 H 1.48507 * 109.47321 * 210.00116 * 10 8 6 13 13 H 1.48500 * 109.47587 * 329.99760 * 10 8 6 14 14 C 1.36846 * 119.37881 * 179.97438 * 3 2 1 15 15 C 1.40272 * 119.05272 * 359.97438 * 14 3 2 16 16 O 1.21939 * 120.18903 * 179.72250 * 15 14 3 17 17 N 1.34753 * 119.62515 * 359.97438 * 15 14 3 18 18 C 1.46499 * 119.69975 * 179.97438 * 17 15 14 19 19 C 1.34537 * 120.60029 * 359.97438 * 17 15 14 20 20 O 1.21583 * 119.50262 * 180.02562 * 19 17 15 21 21 H 1.08995 * 109.47000 * 94.57718 * 1 2 3 22 22 H 1.09003 * 109.47070 * 214.57813 * 1 2 3 23 23 H 1.08995 * 109.46809 * 334.57202 * 1 2 3 24 24 H 1.09001 * 109.46719 * 305.07061 * 5 4 3 25 25 H 1.08996 * 109.47113 * 65.07068 * 5 4 3 26 26 H 0.97007 * 119.99495 * 179.97438 * 9 8 6 27 27 H 1.07998 * 120.47398 * 180.02562 * 14 3 2 28 28 H 1.09003 * 109.46914 * 0.02562 * 18 17 15 29 29 H 1.08996 * 109.46971 * 120.00111 * 18 17 15 30 30 H 1.09004 * 109.46823 * 240.00099 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1490 1.1928 0.0000 4 16 1.2717 2.7209 -0.0007 5 6 0.5263 2.6547 -1.6489 6 6 -0.1925 3.9495 -1.9274 7 1 -0.1997 4.7338 -1.1850 8 6 -0.8410 4.1329 -3.1303 9 7 -0.8318 3.1781 -4.0347 10 14 -1.7327 5.7377 -3.4754 11 1 -0.7971 6.6957 -4.1174 12 1 -2.8793 5.4815 -4.3837 13 1 -2.2306 6.3117 -2.1996 14 6 3.5174 1.1821 0.0005 15 6 4.1889 -0.0494 0.0016 16 8 5.4078 -0.0832 -0.0030 17 7 3.4794 -1.1950 0.0026 18 6 4.1791 -2.4822 0.0032 19 6 2.1343 -1.1675 0.0031 20 8 1.5141 -2.2133 0.0045 21 1 -0.3633 -0.0820 -1.0243 22 1 -0.3633 -0.8462 0.5832 23 1 -0.3633 0.9281 0.4412 24 1 1.3069 2.5046 -2.3947 25 1 -0.1829 1.8283 -1.6939 26 1 -1.2884 3.3071 -4.8808 27 1 4.0724 2.1086 0.0010 28 1 5.2555 -2.3105 0.0031 29 1 3.9015 -3.0462 0.8936 30 1 3.9008 -3.0473 -0.8864 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596270230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:13 Heat of formation + Delta-G solvation = -52.005792 kcal Electronic energy + Delta-G solvation = -16807.809174 eV Core-core repulsion = 13922.737266 eV Total energy + Delta-G solvation = -2885.071909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.43511 -40.26003 -38.40545 -36.42696 -35.32879 -33.10636 -30.83655 -29.39187 -28.02207 -25.72792 -24.74099 -24.48784 -20.61383 -19.27855 -18.84064 -18.42239 -18.23838 -17.28517 -16.71508 -16.58125 -15.98287 -15.69144 -15.01982 -14.92081 -14.82188 -14.45864 -14.31226 -13.94251 -13.33823 -13.27937 -12.97393 -12.85504 -12.70902 -12.38382 -12.03411 -11.68103 -11.49183 -11.16960 -10.94036 -10.74655 -9.79730 -8.82074 -8.34431 -6.48695 -0.59547 0.23561 0.72190 0.87483 1.45199 1.46569 1.53049 1.59770 1.84000 2.24838 2.37537 3.02681 3.36731 3.88958 4.00487 4.26049 4.29318 4.36516 4.42285 4.50019 4.62600 4.67951 4.73941 4.85577 4.93472 5.21356 5.54421 5.79704 5.93706 6.22538 6.59192 6.66304 7.21418 8.76666 Molecular weight = 256.07amu Principal moments of inertia in cm(-1) A = 0.034449 B = 0.005578 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.590201 B = 5018.677722 C = 5301.496820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.522 5.522 3 C 0.174 3.826 4 S -0.075 6.075 5 C 0.060 3.940 6 C -0.537 4.537 7 H 0.073 0.927 8 C 0.023 3.977 9 N -0.921 5.921 10 Si 0.972 3.028 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.260 1.260 14 C -0.259 4.259 15 C 0.552 3.448 16 O -0.544 6.544 17 N -0.556 5.556 18 C 0.075 3.925 19 C 0.692 3.308 20 O -0.557 6.557 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.113 0.887 24 H 0.021 0.979 25 H 0.042 0.958 26 H 0.270 0.730 27 H 0.190 0.810 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.661 -5.517 7.958 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.242 5.242 3 C -0.043 4.043 4 S 0.160 5.840 5 C -0.087 4.087 6 C -0.576 4.576 7 H 0.091 0.909 8 C -0.179 4.179 9 N -0.560 5.560 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.184 1.184 14 C -0.290 4.290 15 C 0.349 3.651 16 O -0.423 6.423 17 N -0.299 5.299 18 C -0.065 4.065 19 C 0.394 3.606 20 O -0.433 6.433 21 H 0.091 0.909 22 H 0.126 0.874 23 H 0.132 0.868 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.207 0.793 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.709 -5.430 8.612 10.835 hybrid contribution -0.346 -0.362 -1.487 1.569 sum 3.362 -5.792 7.125 9.778 Atomic orbital electron populations 1.22471 0.73421 1.07016 1.04731 1.45403 1.10227 1.03263 1.65325 1.23851 0.95659 0.91239 0.93563 1.85878 1.59627 1.12414 1.26079 1.21330 0.97710 1.01602 0.88008 1.20894 1.34213 1.00116 1.02425 0.90866 1.25799 0.96461 1.00508 0.95177 1.70044 1.43434 1.34739 1.07739 0.85328 0.77926 0.78529 0.78632 1.19856 1.20688 1.18398 1.22363 0.91342 0.99575 1.15764 1.17062 0.87686 0.84192 0.76197 1.90876 1.13221 1.87454 1.50717 1.46410 1.05807 1.11699 1.66024 1.22104 0.98804 0.80807 1.04801 1.15931 0.81821 0.84053 0.78809 1.90968 1.66544 1.30208 1.55565 0.90877 0.87365 0.86837 0.96061 0.93940 0.92061 0.79319 0.87496 0.88994 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.83 8.76 127.77 1.12 2.95 16 2 N -0.52 -16.47 3.03 -675.00 -2.04 -18.52 16 3 C 0.17 5.60 6.35 83.48 0.53 6.13 16 4 S -0.07 -2.60 19.97 -56.49 -1.13 -3.73 16 5 C 0.06 2.70 5.19 71.24 0.37 3.07 16 6 C -0.54 -26.49 9.13 25.60 0.23 -26.26 16 7 H 0.07 3.50 7.71 -2.91 -0.02 3.48 16 8 C 0.02 1.14 5.46 84.65 0.46 1.60 16 9 N -0.92 -49.76 13.29 21.45 0.28 -49.47 16 10 Si 0.97 39.62 29.54 68.60 2.03 41.65 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 12 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 14 C -0.26 -8.06 9.73 22.44 0.22 -7.84 16 15 C 0.55 17.81 7.40 84.74 0.63 18.44 16 16 O -0.54 -19.33 16.41 -5.12 -0.08 -19.42 16 17 N -0.56 -16.69 2.96 -807.83 -2.39 -19.08 16 18 C 0.08 1.73 9.97 127.77 1.27 3.00 16 19 C 0.69 22.34 8.12 179.19 1.45 23.79 16 20 O -0.56 -19.32 15.86 -3.98 -0.06 -19.38 16 21 H 0.07 2.23 7.29 -2.39 -0.02 2.21 16 22 H 0.11 2.67 7.52 -2.39 -0.02 2.65 16 23 H 0.11 3.09 6.41 -2.39 -0.02 3.08 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 1.94 6.06 -2.40 -0.01 1.92 16 26 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 27 H 0.19 5.33 8.06 -2.91 -0.02 5.30 16 28 H 0.11 2.34 6.88 -2.39 -0.02 2.33 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -58.74 275.14 4.06 -54.69 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.16 Total: 8.38 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 6.29 Total: 24.88 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -4.15 Total: -87.07 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.15 Total: -38.80 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -1.13 Total: -3.73 kcal Total: -58.74 4.06 -54.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596270230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.680 kcal (2) G-P(sol) polarization free energy of solvation -58.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds