Wall clock time and date at job start Mon Mar 30 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00050 * 2 1 4 4 C 1.50708 * 109.46754 * 293.94683 * 3 2 1 5 5 H 1.08003 * 119.99951 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00365 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46856 * 89.99717 * 8 6 4 10 10 H 1.48495 * 109.46936 * 209.99822 * 8 6 4 11 11 H 1.48504 * 109.47196 * 330.00014 * 8 6 4 12 12 C 1.38540 * 110.99881 * 123.95201 * 2 1 3 13 13 N 1.32982 * 120.51194 * 295.24369 * 12 2 1 14 14 C 1.31992 * 120.65961 * 180.02562 * 13 12 2 15 15 F 1.35103 * 119.11619 * 180.02562 * 14 13 12 16 16 N 1.32038 * 121.76423 * 0.02562 * 14 13 12 17 17 C 1.32536 * 120.98087 * 359.97438 * 16 14 13 18 18 C 1.38118 * 119.23120 * 359.72119 * 17 16 14 19 19 N 1.48022 * 120.80420 * 180.27425 * 18 17 16 20 20 O 1.21804 * 119.99706 * 5.48975 * 19 18 17 21 21 O 1.21791 * 119.99915 * 185.49100 * 19 18 17 22 22 H 1.08992 * 109.47721 * 301.44978 * 1 2 3 23 23 H 1.09002 * 109.47263 * 61.44871 * 1 2 3 24 24 H 1.09002 * 109.47229 * 181.44439 * 1 2 3 25 25 H 1.08995 * 109.47482 * 53.94938 * 3 2 1 26 26 H 1.08998 * 109.47329 * 173.95383 * 3 2 1 27 27 H 0.96999 * 119.99622 * 180.02562 * 7 6 4 28 28 H 1.08000 * 120.38924 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0740 1.5113 -2.0486 6 6 2.0269 3.3494 -1.5286 7 7 1.7136 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2311 9 1 4.4523 4.0636 -0.4559 10 1 2.6917 5.7259 -0.3229 11 1 2.6292 3.7756 1.1170 12 6 1.9654 -0.7224 1.0729 13 7 1.7512 -0.3126 2.3197 14 6 2.2233 -0.9983 3.3440 15 9 1.9867 -0.5538 4.5977 16 7 2.9205 -2.1069 3.1762 17 6 3.1739 -2.5765 1.9630 18 6 2.6938 -1.8946 0.8620 19 7 2.9510 -2.3910 -0.5085 20 8 3.5054 -3.4629 -0.6739 21 8 2.6083 -1.7277 -1.4708 22 1 -0.3634 0.5361 0.8766 23 1 -0.3634 0.4912 -0.9027 24 1 -0.3634 -1.0274 0.0259 25 1 1.5610 1.9274 0.8308 26 1 3.0796 1.3444 0.1082 27 1 1.9882 4.8552 -2.8236 28 1 3.7448 -3.4845 1.8368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688997312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:14 Heat of formation + Delta-G solvation = 44.798826 kcal Electronic energy + Delta-G solvation = -19079.631811 eV Core-core repulsion = 15664.837241 eV Total energy + Delta-G solvation = -3414.794570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.71528 -42.32788 -41.12304 -37.71987 -36.15535 -33.98204 -32.93827 -32.12042 -28.35608 -26.95006 -26.46504 -24.04936 -23.37244 -21.35202 -19.41334 -19.35246 -18.62281 -17.72613 -17.51506 -17.03639 -16.92352 -15.74623 -15.12765 -14.94327 -14.44678 -14.15502 -13.71155 -13.45557 -13.06371 -12.52584 -12.00508 -11.49682 -11.44896 -11.28701 -10.91058 -10.90816 -10.78451 -10.74354 -10.28700 -10.22349 -9.98262 -9.56144 -8.74229 -8.35567 -6.20233 -4.20561 -0.53449 0.21934 1.22462 1.34659 2.37631 2.83168 3.05508 3.17642 3.25305 3.27066 3.42395 4.03590 4.27279 4.36923 4.68999 5.10049 5.36914 5.57573 5.79129 5.96489 6.20258 6.45716 6.50075 6.51327 6.97850 7.09935 7.13015 7.52506 7.88195 8.37686 8.87902 9.37442 10.91759 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.008303 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.339365 B = 3371.346058 C = 4233.322508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.470 5.470 3 C 0.171 3.829 4 C -0.514 4.514 5 H 0.092 0.908 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.866 3.134 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.466 3.534 13 N -0.558 5.558 14 C 0.548 3.452 15 F -0.064 7.064 16 N -0.540 5.540 17 C 0.258 3.742 18 C -0.157 4.157 19 N 0.036 4.964 20 O -0.196 6.196 21 O -0.058 6.058 22 H 0.041 0.959 23 H 0.107 0.893 24 H 0.051 0.949 25 H 0.016 0.984 26 H 0.023 0.977 27 H 0.267 0.733 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -11.240 10.238 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.194 5.194 3 C 0.048 3.952 4 C -0.552 4.552 5 H 0.110 0.890 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.693 3.307 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.228 3.772 13 N -0.284 5.284 14 C 0.269 3.731 15 F -0.043 7.043 16 N -0.263 5.263 17 C 0.091 3.909 18 C -0.248 4.248 19 N 0.561 4.439 20 O -0.397 6.397 21 O -0.296 6.296 22 H 0.060 0.940 23 H 0.126 0.874 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.709 -10.777 11.413 15.713 hybrid contribution 0.547 0.784 0.672 1.168 sum 1.256 -9.993 12.084 15.731 Atomic orbital electron populations 1.22381 0.83036 1.00763 1.04223 1.60765 1.10628 1.19643 1.28376 1.20414 0.94935 0.80203 0.99698 1.20808 1.36948 0.97268 1.00215 0.89013 1.24776 0.95448 0.97099 0.95197 1.69853 1.45869 1.13410 1.23427 0.87007 0.81100 0.79928 0.82697 1.20014 1.20650 1.19217 1.20508 0.82934 0.86665 0.87072 1.68739 1.25713 1.34623 0.99329 1.19340 0.86999 0.85599 0.81200 1.91792 1.90821 1.87310 1.34388 1.68197 1.18736 1.14137 1.25191 1.23031 0.88123 0.96421 0.83331 1.22904 1.13193 1.01955 0.86753 1.42803 0.99293 1.00243 1.01601 1.94515 1.43929 1.09708 1.91516 1.94779 1.50162 1.55345 1.29274 0.94023 0.87432 0.92999 0.96633 0.95932 0.92274 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.18 60.06 0.55 1.27 15 2 N -0.47 -9.25 2.79 -182.27 -0.51 -9.76 15 3 C 0.17 3.92 3.53 -4.97 -0.02 3.90 15 4 C -0.51 -13.65 9.09 -34.44 -0.31 -13.96 15 5 H 0.09 2.61 7.34 -52.48 -0.39 2.23 15 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 15 7 N -0.89 -25.89 13.96 55.43 0.77 -25.11 15 8 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 15 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 15 12 C 0.47 8.05 5.27 -154.79 -0.82 7.24 15 13 N -0.56 -9.29 9.98 -14.17 -0.14 -9.43 15 14 C 0.55 7.85 9.46 -91.77 -0.87 6.98 15 15 F -0.06 -0.85 17.32 2.25 0.04 -0.81 15 16 N -0.54 -6.92 10.45 -15.02 -0.16 -7.07 15 17 C 0.26 3.03 10.81 -17.29 -0.19 2.84 15 18 C -0.16 -2.37 6.90 -79.48 -0.55 -2.92 15 19 N 0.04 0.59 4.45 34.19 0.15 0.75 15 20 O -0.20 -3.05 18.55 -29.46 -0.55 -3.60 15 21 O -0.06 -1.13 17.29 -29.46 -0.51 -1.64 15 22 H 0.04 0.70 8.07 -51.93 -0.42 0.28 15 23 H 0.11 1.97 6.90 -51.93 -0.36 1.61 15 24 H 0.05 0.77 8.11 -51.93 -0.42 0.34 15 25 H 0.02 0.37 7.14 -51.93 -0.37 0.00 15 26 H 0.02 0.53 7.48 -51.93 -0.39 0.15 15 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 28 H 0.21 1.64 7.70 -52.49 -0.40 1.24 15 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -28.88 263.79 -5.80 -34.69 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: -1.91 Total: -5.29 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -2.30 Total: 7.40 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.12 Total: -50.63 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -1.06 Total: -5.24 kcal Atomic # 9 Polarization: -0.85 SS G_CDS: 0.04 Total: -0.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.88 -5.80 -34.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688997312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.486 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds