Wall clock time and date at job start Mon Mar 30 2020 04:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46900 * 111.00050 * 2 1 4 4 C 1.50708 * 109.46754 * 293.94683 * 3 2 1 5 5 H 1.08003 * 119.99951 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99529 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99546 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00365 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.46856 * 89.99717 * 8 6 4 10 10 H 1.48495 * 109.46936 * 209.99822 * 8 6 4 11 11 H 1.48504 * 109.47196 * 330.00014 * 8 6 4 12 12 C 1.38540 * 110.99881 * 123.95201 * 2 1 3 13 13 N 1.32982 * 120.51194 * 295.24369 * 12 2 1 14 14 C 1.31992 * 120.65961 * 180.02562 * 13 12 2 15 15 F 1.35103 * 119.11619 * 180.02562 * 14 13 12 16 16 N 1.32038 * 121.76423 * 0.02562 * 14 13 12 17 17 C 1.32536 * 120.98087 * 359.97438 * 16 14 13 18 18 C 1.38118 * 119.23120 * 359.72119 * 17 16 14 19 19 N 1.48022 * 120.80420 * 180.27425 * 18 17 16 20 20 O 1.21804 * 119.99706 * 5.48975 * 19 18 17 21 21 O 1.21791 * 119.99915 * 185.49100 * 19 18 17 22 22 H 1.08992 * 109.47721 * 301.44978 * 1 2 3 23 23 H 1.09002 * 109.47263 * 61.44871 * 1 2 3 24 24 H 1.09002 * 109.47229 * 181.44439 * 1 2 3 25 25 H 1.08995 * 109.47482 * 53.94938 * 3 2 1 26 26 H 1.08998 * 109.47329 * 173.95383 * 3 2 1 27 27 H 0.96999 * 119.99622 * 180.02562 * 7 6 4 28 28 H 1.08000 * 120.38924 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0740 1.5113 -2.0486 6 6 2.0269 3.3494 -1.5286 7 7 1.7136 3.9391 -2.6617 8 14 2.9999 4.2762 -0.2311 9 1 4.4523 4.0636 -0.4559 10 1 2.6917 5.7259 -0.3229 11 1 2.6292 3.7756 1.1170 12 6 1.9654 -0.7224 1.0729 13 7 1.7512 -0.3126 2.3197 14 6 2.2233 -0.9983 3.3440 15 9 1.9867 -0.5538 4.5977 16 7 2.9205 -2.1069 3.1762 17 6 3.1739 -2.5765 1.9630 18 6 2.6938 -1.8946 0.8620 19 7 2.9510 -2.3910 -0.5085 20 8 3.5054 -3.4629 -0.6739 21 8 2.6083 -1.7277 -1.4708 22 1 -0.3634 0.5361 0.8766 23 1 -0.3634 0.4912 -0.9027 24 1 -0.3634 -1.0274 0.0259 25 1 1.5610 1.9274 0.8308 26 1 3.0796 1.3444 0.1082 27 1 1.9882 4.8552 -2.8236 28 1 3.7448 -3.4845 1.8368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688997312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:14 Heat of formation + Delta-G solvation = 26.438203 kcal Electronic energy + Delta-G solvation = -19080.427988 eV Core-core repulsion = 15664.837241 eV Total energy + Delta-G solvation = -3415.590747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.80803 -43.56707 -42.36741 -39.13884 -37.45526 -35.33834 -34.67333 -33.57855 -30.22783 -28.24424 -27.74304 -25.56917 -24.63883 -23.03635 -20.66194 -20.56577 -19.87764 -19.06315 -18.90163 -18.70694 -18.09070 -17.14530 -16.79544 -16.23141 -15.76652 -15.50584 -15.09030 -14.97009 -14.48869 -14.23970 -13.60220 -13.18187 -12.89864 -12.62557 -12.60504 -12.38690 -12.21689 -12.10620 -12.02061 -11.65157 -11.47476 -11.21321 -10.84847 -9.91548 -8.32836 -6.37702 -1.74111 -0.91827 -0.05737 0.11746 1.23684 1.29127 1.30951 1.39277 1.67863 1.81918 2.27252 2.30931 2.88801 2.97724 3.03652 3.71639 4.09644 4.36400 4.37612 4.52826 4.65735 4.82957 4.94235 5.16996 5.29789 5.45616 5.77708 5.85440 6.32382 6.54614 6.69843 7.23797 8.82731 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.008303 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.339365 B = 3371.346058 C = 4233.322508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.484 5.484 3 C 0.187 3.813 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.934 5.934 8 Si 0.931 3.069 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.256 1.256 12 C 0.453 3.547 13 N -0.580 5.580 14 C 0.554 3.446 15 F -0.056 7.056 16 N -0.527 5.527 17 C 0.287 3.713 18 C -0.161 4.161 19 N 0.041 4.959 20 O -0.133 6.133 21 O -0.152 6.152 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.013 0.987 26 H 0.018 0.982 27 H 0.270 0.730 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -13.085 12.909 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.208 5.208 3 C 0.062 3.938 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.574 5.574 8 Si 0.755 3.245 9 H -0.194 1.194 10 H -0.200 1.200 11 H -0.180 1.180 12 C 0.216 3.784 13 N -0.307 5.307 14 C 0.276 3.724 15 F -0.036 7.036 16 N -0.248 5.248 17 C 0.121 3.879 18 C -0.252 4.252 19 N 0.563 4.437 20 O -0.354 6.354 21 O -0.365 6.365 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.031 0.969 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.020 -12.466 14.008 18.860 hybrid contribution 0.150 1.066 -0.035 1.077 sum 2.171 -11.400 13.973 18.164 Atomic orbital electron populations 1.22325 0.82237 1.02156 1.03194 1.60514 1.11601 1.17885 1.30767 1.20007 0.94509 0.82102 0.97188 1.20973 1.35926 0.97393 1.01015 0.92574 1.25601 0.96618 0.98150 0.97264 1.69993 1.47718 1.14005 1.25678 0.85966 0.79613 0.78614 0.80330 1.19368 1.20027 1.17957 1.20308 0.83984 0.87428 0.86728 1.68571 1.26837 1.35764 0.99505 1.19377 0.86524 0.85609 0.80931 1.91815 1.90675 1.87302 1.33768 1.68405 1.18046 1.13139 1.25247 1.23811 0.86173 0.96491 0.81470 1.22942 1.13791 1.02003 0.86507 1.42970 0.98695 1.00021 1.02041 1.94457 1.40504 1.08669 1.91725 1.94843 1.54569 1.56757 1.30343 0.93717 0.89597 0.90470 0.96916 0.96392 0.92093 0.72805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.64 9.18 127.69 1.17 2.81 15 2 N -0.48 -19.34 2.79 -730.56 -2.04 -21.38 15 3 C 0.19 8.68 3.53 85.56 0.30 8.98 15 4 C -0.51 -28.47 9.09 25.60 0.23 -28.24 15 5 H 0.06 3.43 7.34 -2.91 -0.02 3.40 15 6 C 0.02 1.29 5.47 84.65 0.46 1.75 15 7 N -0.93 -56.39 13.96 21.45 0.30 -56.09 15 8 Si 0.93 42.78 27.47 68.60 1.88 44.66 15 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 15 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 11 H -0.26 -11.15 6.54 99.48 0.65 -10.49 15 12 C 0.45 15.09 5.27 133.16 0.70 15.79 15 13 N -0.58 -18.23 9.98 -198.74 -1.98 -20.21 15 14 C 0.55 14.20 9.46 180.75 1.71 15.91 15 15 F -0.06 -1.34 17.32 44.97 0.78 -0.56 15 16 N -0.53 -11.22 10.45 -201.44 -2.10 -13.32 15 17 C 0.29 5.38 10.81 84.56 0.91 6.30 15 18 C -0.16 -4.45 6.90 36.68 0.25 -4.19 15 19 N 0.04 1.30 4.45 -45.74 -0.20 1.10 15 20 O -0.13 -3.64 18.55 18.88 0.35 -3.29 15 21 O -0.15 -6.01 17.29 18.90 0.33 -5.69 15 22 H 0.04 1.52 8.07 -2.39 -0.02 1.50 15 23 H 0.09 3.37 6.90 -2.39 -0.02 3.35 15 24 H 0.08 2.28 8.11 -2.39 -0.02 2.27 15 25 H 0.01 0.61 7.14 -2.39 -0.02 0.59 15 26 H 0.02 0.85 7.48 -2.39 -0.02 0.83 15 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 28 H 0.26 2.29 7.70 -2.91 -0.02 2.27 15 Total: -1.00 -64.64 263.79 4.22 -60.42 By element: Atomic # 1 Polarization: -5.92 SS G_CDS: 1.16 Total: -4.76 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.75 Total: 19.11 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -6.03 Total: -109.90 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.68 Total: -8.98 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.78 Total: -0.56 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Total: -64.64 4.22 -60.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688997312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.858 kcal (2) G-P(sol) polarization free energy of solvation -64.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds