Wall clock time and date at job start Mon Mar 30 2020 04:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48505 * 109.47028 * 269.99986 * 3 2 1 5 5 H 1.48497 * 109.47351 * 29.99945 * 3 2 1 6 6 H 1.48499 * 109.47386 * 150.00193 * 3 2 1 7 7 C 1.37872 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00502 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47476 * 179.97438 * 9 7 2 11 11 O 1.45191 * 109.47581 * 179.97438 * 10 9 7 12 12 C 1.34231 * 117.00267 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00132 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00004 * 180.02562 * 12 11 10 15 15 O 1.42905 * 109.47208 * 180.02562 * 14 12 11 16 16 C 1.36232 * 117.00188 * 179.97438 * 15 14 12 17 17 C 1.38668 * 122.58400 * 179.97438 * 16 15 14 18 18 C 1.33433 * 114.88144 * 180.02562 * 17 16 15 19 19 S 1.75865 * 109.66167 * 359.75827 * 18 17 16 20 20 C 1.33630 * 122.58638 * 0.02643 * 16 15 14 21 21 H 0.96996 * 120.00067 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.47189 * 59.99720 * 9 7 2 23 23 H 1.09000 * 109.47280 * 299.99906 * 9 7 2 24 24 H 1.09008 * 109.46748 * 59.99930 * 10 9 7 25 25 H 1.09000 * 109.47182 * 300.00447 * 10 9 7 26 26 H 1.08997 * 109.47783 * 59.99782 * 14 12 11 27 27 H 1.09001 * 109.47298 * 299.99814 * 14 12 11 28 28 H 1.07996 * 122.55913 * 0.04163 * 17 16 15 29 29 H 1.08000 * 125.16852 * 180.02562 * 18 17 16 30 30 H 1.08002 * 125.19356 * 359.94691 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2504 -6.0452 0.0018 13 8 3.4570 -5.9820 0.0023 14 6 1.5663 -7.3879 0.0018 15 8 2.5505 -8.4240 0.0031 16 6 2.0964 -9.7085 0.0039 17 6 2.9491 -10.8020 0.0047 18 6 2.3397 -11.9890 0.0048 19 16 0.5962 -11.7592 0.0110 20 6 0.7950 -10.0117 0.0030 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6042 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 0.9438 -7.4787 -0.8883 27 1 0.9432 -7.4782 0.8916 28 1 4.0243 -10.7006 0.0053 29 1 2.8411 -12.9456 0.0058 30 1 -0.0115 -9.2934 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800310720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:12 Heat of formation + Delta-G solvation = -92.001865 kcal Electronic energy + Delta-G solvation = -15653.643195 eV Core-core repulsion = 12734.544176 eV Total energy + Delta-G solvation = -2919.099020 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48118 -39.53178 -36.53630 -35.83268 -33.40257 -30.61531 -29.39870 -29.00165 -25.12274 -23.85786 -21.37053 -20.64070 -19.98371 -18.57889 -17.29512 -17.14713 -16.81711 -16.19011 -15.77914 -15.46569 -14.55836 -14.38990 -13.94066 -13.58654 -13.16579 -12.80478 -12.64770 -12.39941 -12.05538 -11.35166 -11.18748 -11.16876 -11.10271 -10.80443 -10.72794 -10.27610 -9.72741 -9.68306 -9.34397 -9.13725 -8.47954 -8.28308 -6.13975 -4.18645 0.68362 1.31602 1.67408 2.32857 2.37860 2.45958 3.26814 3.32853 3.36627 3.61413 4.35911 4.61595 4.76094 4.87757 4.95591 5.00338 5.14375 5.22829 5.58739 5.65201 5.90303 6.00565 6.02357 6.56254 6.84161 6.94089 7.50451 7.56465 7.82042 8.07165 8.19493 8.86826 9.46118 10.97536 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.073143 B = 0.002967 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.717701 B = 9433.996534 C = 9790.963394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.458 3.542 13 O -0.495 6.495 14 C 0.069 3.931 15 O -0.283 6.283 16 C 0.119 3.881 17 C -0.139 4.139 18 C -0.189 4.189 19 S 0.118 5.882 20 C -0.325 4.325 21 H 0.264 0.736 22 H 0.029 0.971 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.173 0.827 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -23.224 0.017 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.270 6.270 12 C 0.299 3.701 13 O -0.383 6.383 14 C -0.007 4.007 15 O -0.197 6.197 16 C 0.063 3.937 17 C -0.170 4.170 18 C -0.324 4.324 19 S 0.379 5.621 20 C -0.460 4.460 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.170 0.830 29 H 0.190 0.810 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.455 -23.899 0.031 23.904 hybrid contribution 1.480 1.989 -0.018 2.479 sum 1.025 -21.910 0.013 21.934 Atomic orbital electron populations 1.69967 1.06111 1.27071 1.49689 1.24981 0.94928 0.99427 0.94787 0.86456 0.79769 0.82722 0.78278 1.20445 1.21019 1.19687 1.20968 0.93224 0.90025 1.52351 0.92182 1.19191 0.94183 0.88891 0.98981 1.23750 0.96496 0.78030 1.01283 1.86482 1.42246 1.15446 1.82797 1.22695 0.86549 0.86726 0.74138 1.90679 1.15451 1.87989 1.44132 1.21915 0.90207 0.83319 1.05272 1.86141 1.33334 1.11033 1.89167 1.17862 0.91277 0.84800 0.99808 1.19496 1.01713 0.89444 1.06394 1.25524 0.97085 1.01684 1.08120 1.84174 1.04357 0.99755 1.73863 1.25435 0.99390 1.00336 1.20888 0.92654 0.95265 0.95240 0.92019 0.92015 0.87788 0.87799 0.83019 0.80965 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.68 5.40 37.16 0.20 1.88 16 11 O -0.35 -6.85 10.22 -39.26 -0.40 -7.25 16 12 C 0.46 7.99 8.03 36.00 0.29 8.28 16 13 O -0.50 -10.23 16.25 -25.48 -0.41 -10.64 16 14 C 0.07 0.87 5.46 36.00 0.20 1.07 16 15 O -0.28 -3.96 9.74 -40.44 -0.39 -4.35 16 16 C 0.12 1.37 6.64 -41.04 -0.27 1.10 16 17 C -0.14 -1.36 10.17 -41.10 -0.42 -1.78 16 18 C -0.19 -1.46 11.22 29.05 0.33 -1.13 16 19 S 0.12 0.95 23.34 -107.50 -2.51 -1.56 16 20 C -0.32 -3.16 10.09 29.12 0.29 -2.87 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.03 0.79 8.14 -51.92 -0.42 0.36 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.34 8.13 -51.92 -0.42 0.92 16 25 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 26 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 27 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.17 1.38 7.02 -52.49 -0.37 1.01 16 LS Contribution 288.09 15.07 4.34 4.34 Total: -1.00 -32.06 288.09 -6.87 -38.93 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.26 Total: -3.90 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.06 Total: -6.39 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -1.21 Total: -22.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.06 -6.87 -38.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800310720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.075 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds