Wall clock time and date at job start Mon Mar 30 2020 04:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99939 * 2 1 4 4 H 1.48505 * 109.47028 * 269.99986 * 3 2 1 5 5 H 1.48497 * 109.47351 * 29.99945 * 3 2 1 6 6 H 1.48499 * 109.47386 * 150.00193 * 3 2 1 7 7 C 1.37872 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00502 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47476 * 179.97438 * 9 7 2 11 11 O 1.45191 * 109.47581 * 179.97438 * 10 9 7 12 12 C 1.34231 * 117.00267 * 180.02562 * 11 10 9 13 13 O 1.20825 * 120.00132 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00004 * 180.02562 * 12 11 10 15 15 O 1.42905 * 109.47208 * 180.02562 * 14 12 11 16 16 C 1.36232 * 117.00188 * 179.97438 * 15 14 12 17 17 C 1.38668 * 122.58400 * 179.97438 * 16 15 14 18 18 C 1.33433 * 114.88144 * 180.02562 * 17 16 15 19 19 S 1.75865 * 109.66167 * 359.75827 * 18 17 16 20 20 C 1.33630 * 122.58638 * 0.02643 * 16 15 14 21 21 H 0.96996 * 120.00067 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.47189 * 59.99720 * 9 7 2 23 23 H 1.09000 * 109.47280 * 299.99906 * 9 7 2 24 24 H 1.09008 * 109.46748 * 59.99930 * 10 9 7 25 25 H 1.09000 * 109.47182 * 300.00447 * 10 9 7 26 26 H 1.08997 * 109.47783 * 59.99782 * 14 12 11 27 27 H 1.09001 * 109.47298 * 299.99814 * 14 12 11 28 28 H 1.07996 * 122.55913 * 0.04163 * 17 16 15 29 29 H 1.08000 * 125.16852 * 180.02562 * 18 17 16 30 30 H 1.08002 * 125.19356 * 359.94691 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2504 -6.0452 0.0018 13 8 3.4570 -5.9820 0.0023 14 6 1.5663 -7.3879 0.0018 15 8 2.5505 -8.4240 0.0031 16 6 2.0964 -9.7085 0.0039 17 6 2.9491 -10.8020 0.0047 18 6 2.3397 -11.9890 0.0048 19 16 0.5962 -11.7592 0.0110 20 6 0.7950 -10.0117 0.0030 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6042 0.8906 25 1 2.8720 -3.6043 -0.8894 26 1 0.9438 -7.4787 -0.8883 27 1 0.9432 -7.4782 0.8916 28 1 4.0243 -10.7006 0.0053 29 1 2.8411 -12.9456 0.0058 30 1 -0.0115 -9.2934 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800310720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:12 Heat of formation + Delta-G solvation = -110.986400 kcal Electronic energy + Delta-G solvation = -15654.466427 eV Core-core repulsion = 12734.544176 eV Total energy + Delta-G solvation = -2919.922251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.74531 -40.63884 -37.88586 -36.88193 -35.48140 -32.51612 -30.34376 -30.00107 -27.02915 -24.76862 -23.13877 -22.15591 -20.80022 -19.46498 -18.76595 -18.20852 -18.09062 -17.98188 -17.11347 -16.73302 -16.48743 -15.16005 -15.10653 -14.91143 -14.39831 -14.23194 -13.83342 -13.68720 -13.16939 -13.07827 -12.87719 -12.63344 -12.58328 -12.06972 -11.92294 -11.82761 -11.56513 -11.54219 -11.37464 -10.62508 -9.80350 -8.99085 -8.28589 -6.41733 0.00997 0.64015 0.97069 0.99397 1.18425 1.41857 1.42508 1.54342 1.70297 2.36341 2.57339 3.06159 3.49170 3.89916 3.96879 4.02517 4.18978 4.20996 4.34265 4.44668 4.65355 4.92340 4.94865 5.18425 5.21736 5.44521 5.45804 5.71453 6.03989 6.10000 6.59280 6.71930 7.28204 8.83990 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.073143 B = 0.002967 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.717701 B = 9433.996534 C = 9790.963394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.356 6.356 12 C 0.458 3.542 13 O -0.531 6.531 14 C 0.078 3.922 15 O -0.312 6.312 16 C 0.093 3.907 17 C -0.167 4.167 18 C -0.176 4.176 19 S 0.149 5.851 20 C -0.331 4.331 21 H 0.268 0.732 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.203 0.797 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -24.337 0.009 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.272 6.272 12 C 0.301 3.699 13 O -0.420 6.420 14 C 0.003 3.997 15 O -0.227 6.227 16 C 0.037 3.963 17 C -0.198 4.198 18 C -0.311 4.311 19 S 0.409 5.591 20 C -0.467 4.467 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.220 0.780 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.494 -25.047 0.021 25.052 hybrid contribution 1.434 2.177 -0.016 2.606 sum 0.939 -22.871 0.006 22.890 Atomic orbital electron populations 1.70081 1.07767 1.28336 1.50325 1.25940 0.95841 1.03353 0.94040 0.85332 0.78534 0.77811 0.78685 1.19536 1.20337 1.18816 1.21371 0.93724 0.91245 1.52610 0.91735 1.18996 0.94320 0.90325 0.96988 1.23260 0.95204 0.78477 1.01286 1.86461 1.42184 1.15405 1.83186 1.23672 0.86302 0.87522 0.72397 1.90661 1.17147 1.88361 1.45847 1.22016 0.89501 0.80249 1.07968 1.86071 1.34421 1.12206 1.89967 1.18150 0.92391 0.83967 1.01756 1.19656 1.02017 0.89852 1.08239 1.25912 0.97162 1.02218 1.05830 1.84114 1.04193 0.98023 1.72735 1.25731 0.99132 1.02013 1.19816 0.92272 0.97214 0.97193 0.92004 0.91971 0.84893 0.84908 0.82944 0.78022 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.64 5.35 29.85 0.16 1.80 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.36 -13.81 10.22 -51.43 -0.53 -14.33 16 12 C 0.46 15.82 8.03 71.23 0.57 16.39 16 13 O -0.53 -22.14 16.25 28.40 0.46 -21.68 16 14 C 0.08 1.85 5.46 71.23 0.39 2.24 16 15 O -0.31 -8.53 9.74 -77.12 -0.75 -9.28 16 16 C 0.09 2.04 6.64 21.33 0.14 2.19 16 17 C -0.17 -3.09 10.17 21.28 0.22 -2.87 16 18 C -0.18 -2.30 11.22 66.73 0.75 -1.55 16 19 S 0.15 2.00 23.34 -56.49 -1.32 0.68 16 20 C -0.33 -5.77 10.09 66.77 0.67 -5.10 16 21 H 0.27 14.85 8.31 -92.71 -0.77 14.07 16 22 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 23 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 2.74 8.13 -2.38 -0.02 2.72 16 25 H 0.06 2.75 8.13 -2.39 -0.02 2.73 16 26 H 0.13 2.38 7.86 -2.39 -0.02 2.36 16 27 H 0.13 2.37 7.86 -2.39 -0.02 2.35 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 30 H 0.18 2.50 7.02 -2.91 -0.02 2.48 16 Total: -1.00 -69.46 288.09 5.31 -64.15 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.15 Total: 2.21 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 3.99 Total: -12.48 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.28 Total: -54.69 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.82 Total: -45.29 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.32 Total: 0.68 kcal Total: -69.46 5.31 -64.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800310720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.839 kcal (2) G-P(sol) polarization free energy of solvation -69.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds