Wall clock time and date at job start Mon Mar 30 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47061 * 2 1 4 4 C 1.50698 * 109.47470 * 239.99827 * 2 1 3 5 5 H 1.08000 * 119.99694 * 240.00093 * 4 2 1 6 6 C 1.37871 * 120.00062 * 59.99588 * 4 2 1 7 7 N 1.31516 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46984 * 60.00130 * 8 6 4 10 10 H 1.48501 * 109.47420 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47175 * 300.00531 * 8 6 4 12 12 C 1.50702 * 109.47186 * 119.99288 * 2 1 3 13 13 O 1.21282 * 119.99800 * 120.00258 * 12 2 1 14 14 N 1.34776 * 120.00241 * 300.00629 * 12 2 1 15 15 C 1.39673 * 120.00095 * 174.38348 * 14 12 2 16 16 C 1.39435 * 120.84722 * 335.47354 * 15 14 12 17 17 C 1.37885 * 119.15333 * 179.75528 * 16 15 14 18 18 N 1.32022 * 120.91490 * 0.53087 * 17 16 15 19 19 C 1.32126 * 121.86885 * 359.72682 * 18 17 16 20 20 F 1.35097 * 119.62573 * 179.97438 * 19 18 17 21 21 C 1.38480 * 120.74246 * 0.02562 * 19 18 17 22 22 F 1.35095 * 120.49583 * 180.02562 * 21 19 18 23 23 H 1.09003 * 109.46704 * 60.00461 * 1 2 3 24 24 H 1.09000 * 109.47073 * 300.00586 * 1 2 3 25 25 H 1.09000 * 109.46513 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00150 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99742 * 354.37540 * 14 12 2 28 28 H 1.07996 * 120.42283 * 0.02562 * 16 15 14 29 29 H 1.07998 * 119.54529 * 180.23552 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8261 -0.4209 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.0726 -0.9721 3.5927 16 6 2.2993 -2.3463 3.5251 17 6 2.6639 -3.0240 4.6692 18 7 2.7895 -2.3916 5.8212 19 6 2.5791 -1.0917 5.9300 20 9 2.7200 -0.4907 7.1317 21 6 2.2146 -0.3388 4.8264 22 9 2.0011 0.9900 4.9433 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.7095 1.1616 -3.4844 27 1 1.2183 0.5834 2.5452 28 1 2.1948 -2.8723 2.5877 29 1 2.8448 -4.0877 4.6232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857695558.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:24 Heat of formation + Delta-G solvation = -86.634599 kcal Electronic energy + Delta-G solvation = -18498.324569 eV Core-core repulsion = 15057.910656 eV Total energy + Delta-G solvation = -3440.413913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.55615 -48.65551 -40.61618 -38.94471 -35.05878 -34.05850 -31.43862 -30.66771 -30.02428 -25.34913 -24.49814 -23.77152 -22.39862 -20.03928 -18.69674 -17.98380 -17.52628 -16.77444 -16.53356 -16.12962 -15.68699 -15.16919 -14.97800 -14.66066 -14.48411 -14.16040 -13.46457 -13.16741 -13.00482 -12.73159 -12.63818 -11.81791 -11.18429 -11.11761 -10.92157 -10.85387 -10.48450 -10.15308 -10.10295 -9.21871 -9.11934 -8.89499 -8.57375 -8.50309 -6.20162 -4.25638 0.65075 0.86469 2.92852 3.06337 3.26453 3.30078 3.32865 3.38571 3.51305 3.94521 4.32478 4.41435 4.53157 4.98298 5.13669 5.37312 5.55067 5.80706 5.91835 6.23244 6.39955 6.57950 6.62262 6.69235 7.19406 7.43322 7.44940 7.62726 7.85616 8.06251 8.58768 8.82593 9.41041 10.87324 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.042479 B = 0.005019 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.995918 B = 5577.009568 C = 6022.581939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.060 0.940 4 C -0.510 4.510 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.523 3.477 13 O -0.509 6.509 14 N -0.673 5.673 15 C 0.211 3.789 16 C -0.176 4.176 17 C 0.145 3.855 18 N -0.513 5.513 19 C 0.302 3.698 20 F -0.105 7.105 21 C -0.024 4.024 22 F -0.121 7.121 23 H 0.099 0.901 24 H 0.014 0.986 25 H 0.035 0.965 26 H 0.264 0.736 27 H 0.418 0.582 28 H 0.175 0.825 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -2.421 11.806 12.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.078 0.922 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.315 3.685 13 O -0.382 6.382 14 N -0.317 5.317 15 C 0.103 3.897 16 C -0.199 4.199 17 C -0.010 4.010 18 N -0.230 5.230 19 C 0.146 3.854 20 F -0.084 7.084 21 C -0.051 4.051 22 F -0.100 7.100 23 H 0.117 0.883 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.255 0.745 28 H 0.193 0.807 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.130 -3.370 12.205 12.662 hybrid contribution -0.194 0.961 -1.124 1.492 sum -0.064 -2.409 11.081 11.340 Atomic orbital electron populations 1.21800 0.95844 1.00266 1.01473 1.18969 0.94519 0.97171 0.88076 0.92217 1.21027 1.31899 1.13239 0.88704 0.90581 1.24942 0.94835 0.94970 0.99237 1.69843 1.36496 1.22790 1.24071 0.86446 0.79337 0.79690 0.81353 1.20056 1.21251 1.20066 1.22622 0.77600 0.84686 0.83614 1.90518 1.35460 1.26270 1.85936 1.44246 1.56727 1.26510 1.04251 1.18190 0.93798 0.91905 0.85794 1.22546 1.02906 0.91789 1.02666 1.22497 0.92933 1.00390 0.85164 1.67148 1.19201 1.06865 1.29800 1.17805 0.99135 0.88136 0.80277 1.91640 1.92882 1.81605 1.42226 1.18021 1.13648 0.79317 0.94127 1.91514 1.93006 1.29060 1.96413 0.88282 0.96707 0.94598 0.92593 0.74532 0.80734 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.87 37.16 0.33 -2.50 15 2 C 0.03 0.76 2.64 -92.92 -0.24 0.52 15 3 H 0.06 1.40 8.14 -51.93 -0.42 0.97 15 4 C -0.51 -13.35 8.37 -34.44 -0.29 -13.64 15 5 H 0.08 2.07 6.75 -52.49 -0.35 1.72 15 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 15 7 N -0.89 -23.66 11.32 55.43 0.63 -23.04 15 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 12 C 0.52 10.55 6.97 -10.98 -0.08 10.48 15 13 O -0.51 -11.33 12.68 5.56 0.07 -11.26 15 14 N -0.67 -10.94 5.17 -9.66 -0.05 -10.99 15 15 C 0.21 3.24 6.48 -83.41 -0.54 2.70 15 16 C -0.18 -2.53 8.79 -39.26 -0.35 -2.88 15 17 C 0.15 1.78 11.17 -17.60 -0.20 1.58 15 18 N -0.51 -7.20 10.37 -13.63 -0.14 -7.35 15 19 C 0.30 4.38 8.41 -17.34 -0.15 4.23 15 20 F -0.10 -1.49 17.21 2.25 0.04 -1.46 15 21 C -0.02 -0.35 7.36 -39.06 -0.29 -0.64 15 22 F -0.12 -1.75 16.84 2.25 0.04 -1.71 15 23 H 0.10 2.31 6.07 -51.93 -0.32 2.00 15 24 H 0.01 0.24 7.70 -51.93 -0.40 -0.16 15 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 27 H 0.42 5.89 8.13 -40.82 -0.33 5.56 15 28 H 0.18 2.71 5.89 -52.49 -0.31 2.40 15 29 H 0.18 1.51 8.06 -52.49 -0.42 1.09 15 LS Contribution 266.01 15.07 4.01 4.01 Total: -1.00 -27.89 266.01 -4.43 -32.32 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.11 Total: 2.51 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.89 Total: 1.37 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.44 Total: -41.37 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.89 -4.43 -32.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857695558.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.311 kcal (2) G-P(sol) polarization free energy of solvation -27.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds