Wall clock time and date at job start Mon Mar 30 2020 04:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47061 * 2 1 4 4 C 1.50698 * 109.47470 * 239.99827 * 2 1 3 5 5 H 1.08000 * 119.99694 * 240.00093 * 4 2 1 6 6 C 1.37871 * 120.00062 * 59.99588 * 4 2 1 7 7 N 1.31516 * 120.00041 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00169 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46984 * 60.00130 * 8 6 4 10 10 H 1.48501 * 109.47420 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47175 * 300.00531 * 8 6 4 12 12 C 1.50702 * 109.47186 * 119.99288 * 2 1 3 13 13 O 1.21282 * 119.99800 * 120.00258 * 12 2 1 14 14 N 1.34776 * 120.00241 * 300.00629 * 12 2 1 15 15 C 1.39673 * 120.00095 * 174.38348 * 14 12 2 16 16 C 1.39435 * 120.84722 * 335.47354 * 15 14 12 17 17 C 1.37885 * 119.15333 * 179.75528 * 16 15 14 18 18 N 1.32022 * 120.91490 * 0.53087 * 17 16 15 19 19 C 1.32126 * 121.86885 * 359.72682 * 18 17 16 20 20 F 1.35097 * 119.62573 * 179.97438 * 19 18 17 21 21 C 1.38480 * 120.74246 * 0.02562 * 19 18 17 22 22 F 1.35095 * 120.49583 * 180.02562 * 21 19 18 23 23 H 1.09003 * 109.46704 * 60.00461 * 1 2 3 24 24 H 1.09000 * 109.47073 * 300.00586 * 1 2 3 25 25 H 1.09000 * 109.46513 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00150 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99742 * 354.37540 * 14 12 2 28 28 H 1.07996 * 120.42283 * 0.02562 * 16 15 14 29 29 H 1.07998 * 119.54529 * 180.23552 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0075 10 1 1.8261 -0.4209 -5.2204 11 1 3.8065 -1.1211 -4.0080 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.0726 -0.9721 3.5927 16 6 2.2993 -2.3463 3.5251 17 6 2.6639 -3.0240 4.6692 18 7 2.7895 -2.3916 5.8212 19 6 2.5791 -1.0917 5.9300 20 9 2.7200 -0.4907 7.1317 21 6 2.2146 -0.3388 4.8264 22 9 2.0011 0.9900 4.9433 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 0.7095 1.1616 -3.4844 27 1 1.2183 0.5834 2.5452 28 1 2.1948 -2.8723 2.5877 29 1 2.8448 -4.0877 4.6232 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857695558.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:24 Heat of formation + Delta-G solvation = -104.224405 kcal Electronic energy + Delta-G solvation = -18499.087320 eV Core-core repulsion = 15057.910656 eV Total energy + Delta-G solvation = -3441.176664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.69744 -49.79830 -41.92250 -40.31116 -36.46210 -35.89752 -33.05303 -31.79053 -31.52048 -27.25128 -25.88814 -24.90799 -23.90966 -21.53699 -19.96857 -19.16650 -18.77517 -18.32202 -17.95746 -17.50524 -17.19157 -16.52140 -16.37869 -16.17572 -15.70617 -15.40597 -15.05820 -14.60626 -14.27318 -14.19131 -13.80049 -13.52845 -12.98335 -12.76568 -12.64420 -12.46532 -12.18334 -12.03783 -11.34078 -11.10631 -10.63520 -10.44168 -10.09448 -9.83440 -8.17739 -6.28981 -0.45383 -0.32534 1.44544 1.44564 1.52007 1.57496 1.65468 2.18669 2.33711 2.44244 2.81704 3.13501 3.31784 3.42002 3.71764 4.19703 4.33044 4.56507 4.68489 4.77308 4.86817 4.95085 5.04662 5.42620 5.44554 5.70696 5.83857 6.09746 6.30608 6.36236 6.79023 7.03699 7.40344 8.87959 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.042479 B = 0.005019 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.995918 B = 5577.009568 C = 6022.581939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.028 3.972 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.531 3.469 13 O -0.535 6.535 14 N -0.661 5.661 15 C 0.195 3.805 16 C -0.180 4.180 17 C 0.165 3.835 18 N -0.518 5.518 19 C 0.298 3.702 20 F -0.104 7.104 21 C -0.021 4.021 22 F -0.121 7.121 23 H 0.074 0.926 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.266 0.734 27 H 0.427 0.573 28 H 0.165 0.835 29 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -3.117 12.697 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.007 3.993 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.323 3.677 13 O -0.410 6.410 14 N -0.306 5.306 15 C 0.088 3.912 16 C -0.203 4.203 17 C 0.010 3.990 18 N -0.234 5.234 19 C 0.144 3.856 20 F -0.083 7.083 21 C -0.047 4.047 22 F -0.100 7.100 23 H 0.093 0.907 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.267 0.733 28 H 0.182 0.818 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.121 -4.041 13.139 13.747 hybrid contribution -0.183 1.158 -1.309 1.758 sum -0.061 -2.883 11.830 12.176 Atomic orbital electron populations 1.21620 0.94523 1.00097 1.02027 1.18870 0.95610 0.96357 0.88460 0.93312 1.21236 1.32054 1.13122 0.90560 0.92333 1.25568 0.95057 0.95640 1.01481 1.69932 1.36968 1.23480 1.24553 0.85641 0.78649 0.78827 0.78733 1.19838 1.20474 1.20173 1.21968 0.77405 0.84136 0.84220 1.90508 1.36659 1.27277 1.86536 1.43785 1.56507 1.26789 1.03519 1.18294 0.95011 0.92391 0.85460 1.22575 1.03143 0.91480 1.03070 1.23081 0.90472 1.01841 0.83653 1.67281 1.19156 1.06580 1.30399 1.17884 0.99131 0.88410 0.80219 1.91641 1.92849 1.81687 1.42137 1.17939 1.13624 0.79315 0.93838 1.91516 1.93015 1.29061 1.96395 0.90748 0.93044 0.95017 0.92518 0.73347 0.81756 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.87 71.98 0.64 -4.50 15 2 C 0.03 1.28 2.64 -12.29 -0.03 1.24 15 3 H 0.05 2.31 8.14 -2.38 -0.02 2.29 15 4 C -0.53 -28.11 8.37 25.60 0.21 -27.90 15 5 H 0.06 3.25 6.75 -2.91 -0.02 3.23 15 6 C 0.02 1.17 5.30 84.65 0.45 1.62 15 7 N -0.91 -48.39 11.32 21.45 0.24 -48.15 15 8 Si 0.96 42.25 29.54 68.60 2.03 44.27 15 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 12 C 0.53 21.28 6.97 87.66 0.61 21.89 15 13 O -0.54 -23.80 12.68 -3.04 -0.04 -23.84 15 14 N -0.66 -20.78 5.17 -302.87 -1.57 -22.35 15 15 C 0.20 5.70 6.48 38.46 0.25 5.95 15 16 C -0.18 -4.85 8.79 22.47 0.20 -4.65 15 17 C 0.16 3.56 11.17 84.58 0.94 4.50 15 18 N -0.52 -13.16 10.37 -197.04 -2.04 -15.20 15 19 C 0.30 8.06 8.41 84.71 0.71 8.77 15 20 F -0.10 -2.79 17.21 44.97 0.77 -2.02 15 21 C -0.02 -0.57 7.36 22.61 0.17 -0.40 15 22 F -0.12 -3.32 16.84 44.97 0.76 -2.56 15 23 H 0.07 3.47 6.07 -2.39 -0.01 3.46 15 24 H 0.05 1.69 7.70 -2.39 -0.02 1.67 15 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 15 26 H 0.27 13.50 8.31 -92.71 -0.77 12.73 15 27 H 0.43 11.46 8.13 -92.71 -0.75 10.71 15 28 H 0.17 4.93 5.89 -2.91 -0.02 4.91 15 29 H 0.22 2.82 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -58.91 266.01 4.77 -54.14 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.46 Total: 9.17 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 4.15 Total: 6.53 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -3.37 Total: -85.69 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 1.53 Total: -4.58 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -58.91 4.77 -54.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857695558.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.083 kcal (2) G-P(sol) polarization free energy of solvation -58.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds