Wall clock time and date at job start Mon Mar 30 2020 04:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47439 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47130 * 299.99786 * 3 2 1 6 6 H 1.48502 * 109.47481 * 59.99584 * 3 2 1 7 7 C 1.37877 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46847 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00274 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.39682 * 119.99859 * 174.37875 * 13 11 10 15 15 C 1.39427 * 120.84926 * 335.48652 * 14 13 11 16 16 C 1.37889 * 119.15791 * 179.72942 * 15 14 13 17 17 N 1.32019 * 120.90660 * 0.55727 * 16 15 14 18 18 C 1.32122 * 121.87368 * 359.71623 * 17 16 15 19 19 F 1.35096 * 119.63106 * 179.97438 * 18 17 16 20 20 C 1.38488 * 120.73972 * 359.97438 * 18 17 16 21 21 F 1.35103 * 120.48647 * 179.97438 * 20 18 17 22 22 H 0.97004 * 120.00250 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47090 * 59.99278 * 9 7 2 24 24 H 1.09001 * 109.46854 * 299.99078 * 9 7 2 25 25 H 1.09000 * 109.47636 * 59.99289 * 10 9 7 26 26 H 1.09009 * 109.46940 * 299.99199 * 10 9 7 27 27 H 0.96996 * 119.99951 * 354.37292 * 13 11 10 28 28 H 1.07996 * 120.42224 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.54916 * 180.29470 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0003 13 7 2.1655 -6.1344 0.0016 14 6 1.4720 -7.3412 0.1195 15 6 0.2179 -7.3887 0.7268 16 6 -0.4383 -8.5979 0.8196 17 7 0.1097 -9.7044 0.3524 18 6 1.2981 -9.7044 -0.2250 19 9 1.8163 -10.8635 -0.6866 20 6 2.0184 -8.5296 -0.3623 21 9 3.2334 -8.5356 -0.9531 22 1 -0.4851 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8904 25 1 2.8712 -3.6040 0.8922 26 1 2.8724 -3.6048 -0.8879 27 1 3.1320 -6.1364 -0.0801 28 1 -0.2356 -6.4892 1.1161 29 1 -1.4122 -8.6411 1.2845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857696259.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:07 Heat of formation + Delta-G solvation = -91.125378 kcal Electronic energy + Delta-G solvation = -17959.500392 eV Core-core repulsion = 14518.891744 eV Total energy + Delta-G solvation = -3440.608648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.72172 -48.82348 -40.87078 -39.21862 -35.40909 -33.69815 -31.77320 -30.83927 -30.57392 -26.20267 -24.17801 -23.85027 -21.82119 -20.26386 -18.79239 -18.22394 -17.89583 -17.01061 -16.71854 -16.32321 -15.81269 -15.47986 -15.22424 -14.73048 -14.62405 -14.50489 -13.75490 -13.41586 -13.26950 -12.81758 -12.68125 -12.31379 -11.38053 -11.29950 -11.03931 -10.69190 -10.39643 -10.17448 -9.85491 -9.48765 -9.23467 -9.14603 -8.82782 -8.44847 -6.08643 -4.13806 0.47581 0.66028 2.62888 2.66569 3.14515 3.25422 3.27869 3.33358 3.35975 3.76032 4.23413 4.33120 4.37436 4.71541 5.16475 5.23627 5.27146 5.45775 5.70302 5.92389 5.95763 5.99926 6.40838 6.59524 7.18300 7.29035 7.58450 7.64859 7.90182 8.06898 8.27642 8.93544 9.50939 11.02192 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.052379 B = 0.003894 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.440441 B = 7187.926338 C = 7642.904205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.514 3.486 12 O -0.499 6.499 13 N -0.673 5.673 14 C 0.206 3.794 15 C -0.174 4.174 16 C 0.148 3.852 17 N -0.509 5.509 18 C 0.303 3.697 19 F -0.103 7.103 20 C -0.020 4.020 21 F -0.120 7.120 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.419 0.581 28 H 0.176 0.824 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -16.135 1.526 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.371 6.371 13 N -0.318 5.318 14 C 0.099 3.901 15 C -0.197 4.197 16 C -0.007 4.007 17 N -0.226 5.226 18 C 0.148 3.852 19 F -0.082 7.082 20 C -0.047 4.047 21 F -0.099 7.099 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.256 0.744 28 H 0.193 0.807 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.654 -16.690 1.562 16.972 hybrid contribution 1.754 1.358 -0.402 2.254 sum 4.407 -15.332 1.160 15.995 Atomic orbital electron populations 1.69991 1.06077 1.26718 1.49861 1.25020 0.94857 0.99364 0.95081 0.86506 0.79983 0.83622 0.77680 1.19711 1.20943 1.20939 1.21195 0.93025 0.90763 1.51874 0.92396 1.18956 0.93080 0.89242 0.98888 1.21995 1.01033 0.90337 1.03442 1.22120 0.88909 0.85080 0.73442 1.90659 1.14232 1.86878 1.45365 1.44023 1.11635 1.03646 1.72520 1.18089 0.93519 0.85102 0.93411 1.22553 0.94372 1.01938 1.00803 1.22549 0.99266 0.85315 0.93571 1.67170 1.09410 1.32977 1.13023 1.17819 0.90081 0.80518 0.96784 1.91653 1.84811 1.46219 1.85473 1.18007 0.85834 0.93756 1.07087 1.91523 1.39763 1.96975 1.81658 0.92852 0.95573 0.95553 0.89175 0.89346 0.74431 0.80660 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.45 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.04 0.88 4.26 -27.88 -0.12 0.76 15 10 C -0.13 -2.26 5.64 -27.88 -0.16 -2.42 15 11 C 0.51 8.45 7.65 -10.98 -0.08 8.37 15 12 O -0.50 -9.83 13.20 5.56 0.07 -9.75 15 13 N -0.67 -8.61 5.32 -9.66 -0.05 -8.66 15 14 C 0.21 2.67 6.48 -83.41 -0.54 2.13 15 15 C -0.17 -2.17 8.79 -39.27 -0.35 -2.51 15 16 C 0.15 1.60 11.17 -17.60 -0.20 1.40 15 17 N -0.51 -6.44 10.37 -13.63 -0.14 -6.58 15 18 C 0.30 3.92 8.41 -17.33 -0.15 3.78 15 19 F -0.10 -1.33 17.21 2.25 0.04 -1.29 15 20 C -0.02 -0.25 7.36 -39.06 -0.29 -0.54 15 21 F -0.12 -1.48 16.84 2.25 0.04 -1.45 15 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 23 H 0.03 0.70 8.10 -51.93 -0.42 0.28 15 24 H 0.03 0.70 8.10 -51.93 -0.42 0.28 15 25 H 0.09 1.41 8.14 -51.93 -0.42 0.99 15 26 H 0.09 1.41 8.14 -51.92 -0.42 0.99 15 27 H 0.42 4.15 8.53 -40.82 -0.35 3.80 15 28 H 0.18 2.38 5.89 -52.49 -0.31 2.07 15 29 H 0.18 1.31 8.06 -52.49 -0.42 0.88 15 LS Contribution 272.43 15.07 4.11 4.11 Total: -1.00 -31.19 272.43 -4.82 -36.00 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.31 Total: -0.81 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.29 Total: -1.95 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.54 Total: -40.65 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.19 -4.82 -36.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857696259.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.121 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds