Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47439 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47130 * 299.99786 * 3 2 1 6 6 H 1.48502 * 109.47481 * 59.99584 * 3 2 1 7 7 C 1.37877 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46847 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00274 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99844 * 179.97438 * 11 10 9 14 14 C 1.39682 * 119.99859 * 174.37875 * 13 11 10 15 15 C 1.39427 * 120.84926 * 335.48652 * 14 13 11 16 16 C 1.37889 * 119.15791 * 179.72942 * 15 14 13 17 17 N 1.32019 * 120.90660 * 0.55727 * 16 15 14 18 18 C 1.32122 * 121.87368 * 359.71623 * 17 16 15 19 19 F 1.35096 * 119.63106 * 179.97438 * 18 17 16 20 20 C 1.38488 * 120.73972 * 359.97438 * 18 17 16 21 21 F 1.35103 * 120.48647 * 179.97438 * 20 18 17 22 22 H 0.97004 * 120.00250 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47090 * 59.99278 * 9 7 2 24 24 H 1.09001 * 109.46854 * 299.99078 * 9 7 2 25 25 H 1.09000 * 109.47636 * 59.99289 * 10 9 7 26 26 H 1.09009 * 109.46940 * 299.99199 * 10 9 7 27 27 H 0.96996 * 119.99951 * 354.37292 * 13 11 10 28 28 H 1.07996 * 120.42224 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.54916 * 180.29470 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0003 13 7 2.1655 -6.1344 0.0016 14 6 1.4720 -7.3412 0.1195 15 6 0.2179 -7.3887 0.7268 16 6 -0.4383 -8.5979 0.8196 17 7 0.1097 -9.7044 0.3524 18 6 1.2981 -9.7044 -0.2250 19 9 1.8163 -10.8635 -0.6866 20 6 2.0184 -8.5296 -0.3623 21 9 3.2334 -8.5356 -0.9531 22 1 -0.4851 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8904 25 1 2.8712 -3.6040 0.8922 26 1 2.8724 -3.6048 -0.8879 27 1 3.1320 -6.1364 -0.0801 28 1 -0.2356 -6.4892 1.1161 29 1 -1.4122 -8.6411 1.2845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857696259.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = -112.268391 kcal Electronic energy + Delta-G solvation = -17960.417222 eV Core-core repulsion = 14518.891744 eV Total energy + Delta-G solvation = -3441.525478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 256.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.71889 -49.81992 -41.99452 -40.38528 -36.60929 -35.60219 -33.34732 -31.95970 -31.80042 -27.95967 -25.44926 -24.88719 -23.41577 -21.60573 -19.87765 -19.33509 -19.02474 -18.46968 -17.93643 -17.39545 -17.28098 -16.73228 -16.44793 -16.27300 -15.75852 -15.63066 -15.13844 -14.63002 -14.37185 -14.16560 -14.06009 -13.78912 -13.26592 -12.87519 -12.48526 -12.43135 -11.95306 -11.68948 -11.49145 -11.25594 -10.75779 -10.56666 -10.13568 -9.90784 -8.18355 -6.30982 -0.48594 -0.37294 1.39805 1.44007 1.44122 1.52873 1.57751 2.15053 2.29372 2.43295 2.78043 3.16062 3.27754 3.37748 3.57263 4.01621 4.27830 4.43073 4.50417 4.54895 4.72193 4.94144 5.03768 5.39419 5.51557 5.62704 5.85176 6.08508 6.16892 6.34010 6.82829 6.92534 7.39328 8.94011 Molecular weight = 256.08amu Principal moments of inertia in cm(-1) A = 0.052379 B = 0.003894 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.440441 B = 7187.926338 C = 7642.904205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.040 3.960 10 C -0.117 4.117 11 C 0.522 3.478 12 O -0.539 6.539 13 N -0.656 5.656 14 C 0.194 3.806 15 C -0.179 4.179 16 C 0.163 3.837 17 N -0.518 5.518 18 C 0.297 3.703 19 F -0.104 7.104 20 C -0.015 4.015 21 F -0.118 7.118 22 H 0.262 0.738 23 H -0.012 1.012 24 H -0.008 1.008 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.434 0.566 28 H 0.165 0.835 29 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -16.564 1.730 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.177 1.177 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.094 0.906 9 C 0.002 3.998 10 C -0.157 4.157 11 C 0.313 3.687 12 O -0.414 6.414 13 N -0.302 5.302 14 C 0.088 3.912 15 C -0.202 4.202 16 C 0.008 3.992 17 N -0.235 5.235 18 C 0.142 3.858 19 F -0.083 7.083 20 C -0.041 4.041 21 F -0.097 7.097 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.010 0.990 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.274 0.726 28 H 0.182 0.818 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.350 -17.164 1.762 17.794 hybrid contribution 1.207 1.405 -0.455 1.907 sum 5.558 -15.759 1.308 16.762 Atomic orbital electron populations 1.70152 1.08105 1.27700 1.51531 1.26047 0.95683 1.03694 0.94812 0.85346 0.79374 0.78555 0.77420 1.17739 1.20924 1.20789 1.21725 0.94064 0.91567 1.50551 0.90573 1.18737 0.93698 0.91939 0.95430 1.21732 0.99571 0.88465 1.05915 1.21735 0.88176 0.85724 0.73060 1.90661 1.15812 1.87457 1.47456 1.43598 1.12280 1.02684 1.71601 1.18165 0.93925 0.84975 0.94158 1.22573 0.94382 1.02232 1.00977 1.23068 1.00002 0.84059 0.92104 1.67270 1.09362 1.33599 1.13235 1.17930 0.90355 0.80548 0.97005 1.91647 1.84882 1.46286 1.85521 1.17881 0.85837 0.93408 1.06974 1.91530 1.39605 1.96951 1.81620 0.92892 0.99389 0.98963 0.86506 0.86971 0.72587 0.81752 0.76793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 15 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 15 3 Si 0.97 42.43 29.54 68.60 2.03 44.46 15 4 H -0.25 -10.26 7.11 99.48 0.71 -9.55 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.54 -28.68 9.11 25.60 0.23 -28.45 15 8 H 0.08 3.67 7.74 -2.91 -0.02 3.65 15 9 C 0.04 1.99 4.26 29.85 0.13 2.11 15 10 C -0.12 -3.99 5.64 29.85 0.17 -3.82 15 11 C 0.52 16.81 7.65 87.66 0.67 17.49 15 12 O -0.54 -21.56 13.20 -3.03 -0.04 -21.60 15 13 N -0.66 -15.69 5.32 -302.88 -1.61 -17.30 15 14 C 0.19 4.76 6.48 38.45 0.25 5.01 15 15 C -0.18 -4.26 8.79 22.47 0.20 -4.06 15 16 C 0.16 3.20 11.17 84.58 0.94 4.14 15 17 N -0.52 -12.15 10.37 -197.03 -2.04 -14.20 15 18 C 0.30 7.22 8.41 84.71 0.71 7.93 15 19 F -0.10 -2.56 17.21 44.97 0.77 -1.79 15 20 C -0.01 -0.34 7.36 22.61 0.17 -0.18 15 21 F -0.12 -2.70 16.84 44.97 0.76 -1.94 15 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 23 H -0.01 -0.71 8.10 -2.39 -0.02 -0.72 15 24 H -0.01 -0.45 8.10 -2.39 -0.02 -0.47 15 25 H 0.12 3.37 8.14 -2.39 -0.02 3.35 15 26 H 0.11 3.30 8.14 -2.38 -0.02 3.28 15 27 H 0.43 7.52 8.53 -92.71 -0.79 6.73 15 28 H 0.17 4.43 5.89 -2.91 -0.02 4.42 15 29 H 0.22 2.53 8.06 -2.91 -0.02 2.51 15 Total: -1.00 -68.46 272.43 4.50 -63.96 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.42 Total: 4.21 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 3.93 Total: 0.38 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.37 Total: -87.68 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.04 Total: -21.60 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 1.53 Total: -3.73 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.46 4.50 -63.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857696259.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.303 kcal (2) G-P(sol) polarization free energy of solvation -68.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds