Wall clock time and date at job start Mon Mar 30 2020 04:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54113 * 2 1 4 4 O 1.42100 * 110.54215 * 136.74760 * 2 1 3 5 5 C 1.76203 * 104.44838 * 248.37328 * 2 1 3 6 6 C 1.38234 * 119.99534 * 269.72613 * 5 2 1 7 7 C 1.38244 * 119.99168 * 179.74799 * 6 5 2 8 8 C 1.38235 * 120.00291 * 0.54830 * 7 6 5 9 9 C 1.50695 * 120.00293 * 179.72565 * 8 7 6 10 10 H 1.08993 * 109.47246 * 204.97858 * 9 8 7 11 11 O 1.42906 * 109.47080 * 324.98302 * 9 8 7 12 12 C 1.50700 * 109.47117 * 84.97728 * 9 8 7 13 13 H 1.08007 * 119.99918 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00238 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99748 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00333 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47114 * 59.99547 * 16 14 12 18 18 H 1.48498 * 109.47193 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47032 * 299.99863 * 16 14 12 20 20 C 1.38235 * 119.99737 * 359.70643 * 8 7 6 21 21 C 1.38228 * 119.99649 * 90.00553 * 5 2 1 22 22 H 1.09002 * 109.47124 * 51.62553 * 1 2 3 23 23 H 1.09001 * 109.46975 * 291.62674 * 1 2 3 24 24 H 1.09004 * 109.47147 * 171.62637 * 1 2 3 25 25 H 1.07997 * 120.00344 * 359.97438 * 6 5 2 26 26 H 1.07998 * 119.99497 * 180.27496 * 7 6 5 27 27 H 0.96699 * 114.00196 * 59.99196 * 11 9 8 28 28 H 0.97007 * 120.00098 * 180.02562 * 15 14 12 29 29 H 1.07998 * 120.00298 * 179.97438 * 20 8 7 30 30 H 1.07998 * 120.00592 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9118 5 6 2.2537 -0.6289 -1.5862 6 6 2.4317 -1.9879 -1.7657 7 6 2.7715 -2.4817 -3.0114 8 6 2.9444 -1.6155 -4.0748 9 6 3.3209 -2.1532 -5.4312 10 1 3.8320 -1.3771 -6.0007 11 8 4.1883 -3.2780 -5.2738 12 6 2.0759 -2.5782 -6.1664 13 1 1.1086 -2.4693 -5.6983 14 6 2.1715 -3.1059 -7.4365 15 7 3.3493 -3.2390 -8.0063 16 14 0.6282 -3.6320 -8.3480 17 1 -0.2725 -2.4629 -8.5122 18 1 0.9993 -4.1620 -9.6847 19 1 -0.0690 -4.6889 -7.5720 20 6 2.7715 -0.2560 -3.8938 21 6 2.4262 0.2374 -2.6495 22 1 -0.3633 0.6380 -0.8057 23 1 -0.3633 0.3788 0.9553 24 1 -0.3634 -1.0167 -0.1497 25 1 2.3017 -2.6641 -0.9338 26 1 2.9062 -3.5439 -3.1528 27 1 3.7981 -4.0089 -4.7753 28 1 3.4166 -3.6100 -8.9001 29 1 2.9070 0.4209 -4.7244 30 1 2.2912 1.2995 -2.5082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536184041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:51 Heat of formation + Delta-G solvation = -96.279315 kcal Electronic energy + Delta-G solvation = -16617.799980 eV Core-core repulsion = 13698.515477 eV Total energy + Delta-G solvation = -2919.284504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.00705 -37.04069 -35.91742 -35.64819 -32.34187 -31.15322 -30.55908 -29.58317 -26.91540 -23.71338 -22.40442 -20.82506 -18.90012 -17.71887 -17.13564 -16.18153 -15.90869 -15.64464 -14.81632 -14.66746 -14.37517 -13.68988 -13.32765 -13.31085 -13.18941 -12.77755 -12.52997 -12.33995 -12.03710 -11.92222 -11.41878 -11.14138 -11.08735 -11.02753 -10.77084 -10.51825 -10.35176 -9.47762 -8.90676 -8.64051 -8.61363 -8.29250 -6.18629 -4.39782 0.11928 1.28673 1.73887 2.96113 3.18644 3.24752 3.25946 3.75294 4.12851 4.14783 4.28698 4.65373 4.84334 5.06730 5.18362 5.20860 5.50290 5.58454 5.75611 5.81202 6.10220 6.19883 6.29352 6.45149 6.71927 6.84604 7.29610 7.51599 7.65133 7.89802 8.61987 9.12780 9.36524 10.84824 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.005177 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.875179 B = 5406.845090 C = 5623.520298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.505 3.495 3 O -0.946 6.946 4 O -0.946 6.946 5 C -0.684 4.684 6 C -0.027 4.027 7 C -0.139 4.139 8 C -0.010 4.010 9 C 0.250 3.750 10 H 0.074 0.926 11 O -0.558 6.558 12 C -0.570 4.570 13 H 0.059 0.941 14 C 0.081 3.919 15 N -0.855 5.855 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.275 1.275 20 C -0.142 4.142 21 C -0.027 4.027 22 H 0.131 0.869 23 H 0.126 0.874 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.128 0.872 27 H 0.347 0.653 28 H 0.265 0.735 29 H 0.129 0.871 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 4.675 12.250 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.686 3.314 3 O -0.943 6.943 4 O -0.943 6.943 5 C -0.772 4.772 6 C -0.046 4.046 7 C -0.158 4.158 8 C -0.010 4.010 9 C 0.193 3.807 10 H 0.092 0.908 11 O -0.361 6.361 12 C -0.607 4.607 13 H 0.077 0.923 14 C -0.126 4.126 15 N -0.490 5.490 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.161 4.161 21 C -0.046 4.046 22 H 0.149 0.851 23 H 0.145 0.855 24 H 0.149 0.851 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.192 0.808 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.262 5.270 12.394 14.459 hybrid contribution -1.792 -0.903 -1.064 2.272 sum -7.055 4.367 11.329 14.043 Atomic orbital electron populations 1.30241 1.26545 1.12025 1.11320 1.04798 0.77490 0.74433 0.74632 1.93555 1.77278 1.36961 1.86549 1.93555 1.77274 1.61690 1.61808 1.30036 1.22921 1.03122 1.21167 1.20801 0.93337 0.92916 0.97528 1.21065 1.01992 1.00420 0.92339 1.21869 0.87364 0.93445 0.98365 1.18694 0.90582 0.86326 0.85109 0.90824 1.86643 1.43946 1.27591 1.77909 1.21404 0.92553 1.45695 1.01049 0.92297 1.25047 0.96093 0.94478 0.96981 1.70057 1.22808 1.41591 1.14562 0.86611 0.83015 0.79116 0.78944 1.20015 1.20988 1.19994 1.21165 1.02287 0.95687 0.96953 1.20808 0.93354 0.98638 0.91827 0.85062 0.85538 0.85059 0.84946 0.85379 0.80759 0.92536 0.85295 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.81 10.80 101.05 1.09 -3.72 16 2 S 2.51 29.48 5.80 -107.50 -0.62 28.86 16 3 O -0.95 -13.81 17.13 -57.54 -0.99 -14.80 16 4 O -0.95 -13.81 17.12 -57.54 -0.98 -14.80 16 5 C -0.68 -10.03 5.66 -39.59 -0.22 -10.26 16 6 C -0.03 -0.42 9.47 -39.58 -0.37 -0.79 16 7 C -0.14 -2.49 9.33 -39.58 -0.37 -2.86 16 8 C -0.01 -0.20 4.94 -104.63 -0.52 -0.72 16 9 C 0.25 6.05 3.07 -29.04 -0.09 5.96 16 10 H 0.07 1.93 8.05 -51.93 -0.42 1.51 16 11 O -0.56 -13.73 12.53 -35.23 -0.44 -14.17 16 12 C -0.57 -14.75 8.75 -34.44 -0.30 -15.05 16 13 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 15 N -0.86 -24.11 12.84 55.43 0.71 -23.40 16 16 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.14 -2.56 9.68 -39.58 -0.38 -2.95 16 21 C -0.03 -0.42 9.47 -39.58 -0.37 -0.80 16 22 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 23 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.13 1.72 7.56 -52.49 -0.40 1.32 16 26 H 0.13 2.12 6.61 -52.49 -0.35 1.77 16 27 H 0.35 7.42 7.39 45.56 0.34 7.75 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 30 H 0.13 1.72 7.57 -52.49 -0.40 1.32 16 LS Contribution 278.55 15.07 4.20 4.20 Total: -1.00 -33.86 278.55 -7.24 -41.10 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.45 Total: 6.93 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -1.64 Total: -29.12 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.71 Total: -23.40 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.41 Total: -43.76 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 29.48 SS G_CDS: -0.62 Total: 28.86 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.86 -7.24 -41.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536184041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.176 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds