Wall clock time and date at job start Mon Mar 30 2020 04:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 110.54113 * 2 1 4 4 O 1.42100 * 110.54215 * 136.74760 * 2 1 3 5 5 C 1.76203 * 104.44838 * 248.37328 * 2 1 3 6 6 C 1.38234 * 119.99534 * 269.72613 * 5 2 1 7 7 C 1.38244 * 119.99168 * 179.74799 * 6 5 2 8 8 C 1.38235 * 120.00291 * 0.54830 * 7 6 5 9 9 C 1.50695 * 120.00293 * 179.72565 * 8 7 6 10 10 H 1.08993 * 109.47246 * 204.97858 * 9 8 7 11 11 O 1.42906 * 109.47080 * 324.98302 * 9 8 7 12 12 C 1.50700 * 109.47117 * 84.97728 * 9 8 7 13 13 H 1.08007 * 119.99918 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00238 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99748 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 120.00333 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47114 * 59.99547 * 16 14 12 18 18 H 1.48498 * 109.47193 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47032 * 299.99863 * 16 14 12 20 20 C 1.38235 * 119.99737 * 359.70643 * 8 7 6 21 21 C 1.38228 * 119.99649 * 90.00553 * 5 2 1 22 22 H 1.09002 * 109.47124 * 51.62553 * 1 2 3 23 23 H 1.09001 * 109.46975 * 291.62674 * 1 2 3 24 24 H 1.09004 * 109.47147 * 171.62637 * 1 2 3 25 25 H 1.07997 * 120.00344 * 359.97438 * 6 5 2 26 26 H 1.07998 * 119.99497 * 180.27496 * 7 6 5 27 27 H 0.96699 * 114.00196 * 59.99196 * 11 9 8 28 28 H 0.97007 * 120.00098 * 180.02562 * 15 14 12 29 29 H 1.07998 * 120.00298 * 179.97438 * 20 8 7 30 30 H 1.07998 * 120.00592 * 359.97438 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9118 5 6 2.2537 -0.6289 -1.5862 6 6 2.4317 -1.9879 -1.7657 7 6 2.7715 -2.4817 -3.0114 8 6 2.9444 -1.6155 -4.0748 9 6 3.3209 -2.1532 -5.4312 10 1 3.8320 -1.3771 -6.0007 11 8 4.1883 -3.2780 -5.2738 12 6 2.0759 -2.5782 -6.1664 13 1 1.1086 -2.4693 -5.6983 14 6 2.1715 -3.1059 -7.4365 15 7 3.3493 -3.2390 -8.0063 16 14 0.6282 -3.6320 -8.3480 17 1 -0.2725 -2.4629 -8.5122 18 1 0.9993 -4.1620 -9.6847 19 1 -0.0690 -4.6889 -7.5720 20 6 2.7715 -0.2560 -3.8938 21 6 2.4262 0.2374 -2.6495 22 1 -0.3633 0.6380 -0.8057 23 1 -0.3633 0.3788 0.9553 24 1 -0.3634 -1.0167 -0.1497 25 1 2.3017 -2.6641 -0.9338 26 1 2.9062 -3.5439 -3.1528 27 1 3.7981 -4.0089 -4.7753 28 1 3.4166 -3.6100 -8.9001 29 1 2.9070 0.4209 -4.7244 30 1 2.2912 1.2995 -2.5082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536184041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:51 Heat of formation + Delta-G solvation = -123.053274 kcal Electronic energy + Delta-G solvation = -16618.960986 eV Core-core repulsion = 13698.515477 eV Total energy + Delta-G solvation = -2920.445510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40549 -38.07293 -37.48427 -36.90422 -34.36736 -32.61948 -31.87713 -30.23176 -28.74898 -25.43213 -23.71334 -22.37174 -19.94573 -19.20914 -18.76332 -17.25206 -17.04396 -17.01510 -16.74504 -16.02453 -15.75001 -15.20490 -14.58601 -14.32261 -14.13236 -14.08778 -13.88756 -13.71155 -13.30399 -13.08659 -12.98232 -12.92269 -12.80351 -12.16689 -12.11444 -12.06689 -11.67433 -11.29449 -10.81801 -10.45707 -9.93625 -9.89460 -8.19946 -6.48263 -0.77317 -0.02574 0.41467 1.40188 1.41183 1.50003 1.98626 2.33565 2.58986 3.05421 3.12026 3.26526 3.87530 4.02437 4.02924 4.16816 4.21340 4.28213 4.46376 4.58783 4.83475 4.96623 5.01391 5.13504 5.25936 5.30795 5.57949 5.82844 5.90989 5.99239 6.61270 7.22998 7.39546 8.83683 Molecular weight = 256.06amu Principal moments of inertia in cm(-1) A = 0.037886 B = 0.005177 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.875179 B = 5406.845090 C = 5623.520298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.519 3.481 3 O -0.977 6.977 4 O -0.976 6.976 5 C -0.680 4.680 6 C -0.027 4.027 7 C -0.150 4.150 8 C -0.042 4.042 9 C 0.252 3.748 10 H 0.037 0.963 11 O -0.575 6.575 12 C -0.576 4.576 13 H 0.060 0.940 14 C 0.029 3.971 15 N -0.898 5.898 16 Si 0.964 3.036 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.157 4.157 21 C -0.027 4.027 22 H 0.150 0.850 23 H 0.158 0.842 24 H 0.151 0.849 25 H 0.161 0.839 26 H 0.133 0.867 27 H 0.359 0.641 28 H 0.265 0.735 29 H 0.128 0.872 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 5.050 14.210 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.701 3.299 3 O -0.974 6.974 4 O -0.973 6.973 5 C -0.765 4.765 6 C -0.045 4.045 7 C -0.169 4.169 8 C -0.042 4.042 9 C 0.194 3.806 10 H 0.055 0.945 11 O -0.381 6.381 12 C -0.614 4.614 13 H 0.078 0.922 14 C -0.174 4.174 15 N -0.534 5.534 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.176 4.176 21 C -0.045 4.045 22 H 0.169 0.831 23 H 0.176 0.824 24 H 0.169 0.831 25 H 0.178 0.822 26 H 0.151 0.849 27 H 0.206 0.794 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.886 5.632 14.335 17.303 hybrid contribution -1.007 -0.949 -1.509 2.048 sum -8.893 4.683 12.825 16.295 Atomic orbital electron populations 1.30027 1.19541 1.14210 1.14025 1.04550 0.79877 0.72889 0.72545 1.93518 1.79779 1.37883 1.86222 1.93519 1.79766 1.62316 1.61719 1.30683 1.20622 1.02715 1.22509 1.21117 0.92292 0.93957 0.97176 1.21195 1.02307 1.00526 0.92840 1.21483 0.90879 0.94823 0.97065 1.18403 0.89439 0.85381 0.87327 0.94496 1.86564 1.44594 1.28426 1.78473 1.21721 0.93212 1.45085 1.01359 0.92156 1.25919 0.99080 0.94521 0.97925 1.70198 1.25162 1.43083 1.14961 0.85537 0.79164 0.78945 0.77514 1.19255 1.20895 1.19027 1.21279 1.02958 0.94965 0.98419 1.21092 0.92348 1.00214 0.90865 0.83113 0.82422 0.83065 0.82179 0.84886 0.79433 0.92638 0.85438 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.68 10.80 113.37 1.22 -4.46 16 2 S 2.52 51.22 5.80 -56.49 -0.33 50.89 16 3 O -0.98 -26.05 17.13 -127.65 -2.19 -28.24 16 4 O -0.98 -25.89 17.12 -127.65 -2.19 -28.08 16 5 C -0.68 -18.44 5.66 22.27 0.13 -18.31 16 6 C -0.03 -0.79 9.47 22.27 0.21 -0.58 16 7 C -0.15 -5.35 9.33 22.27 0.21 -5.14 16 8 C -0.04 -1.74 4.94 -19.87 -0.10 -1.84 16 9 C 0.25 12.76 3.07 29.10 0.09 12.84 16 10 H 0.04 2.09 8.05 -2.39 -0.02 2.07 16 11 O -0.58 -29.61 12.53 -148.98 -1.87 -31.48 16 12 C -0.58 -30.59 8.75 25.60 0.22 -30.36 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.03 1.55 5.40 84.65 0.46 2.01 16 15 N -0.90 -52.23 12.84 21.45 0.28 -51.95 16 16 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 17 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 C -0.16 -5.76 9.68 22.27 0.22 -5.55 16 21 C -0.03 -0.79 9.47 22.27 0.21 -0.58 16 22 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.16 3.72 7.56 -2.91 -0.02 3.69 16 26 H 0.13 4.42 6.61 -2.91 -0.02 4.40 16 27 H 0.36 15.96 7.39 -74.06 -0.55 15.41 16 28 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.16 3.77 7.57 -2.91 -0.02 3.75 16 Total: -1.00 -75.19 278.55 -0.78 -75.97 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.62 Total: 21.10 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 2.87 Total: -51.96 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.28 Total: -51.95 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -6.24 Total: -87.79 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 51.22 SS G_CDS: -0.33 Total: 50.89 kcal Total: -75.19 -0.78 -75.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536184041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.087 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds